Subsetting COBRAData
, COBRAPerformance
or COBRAPlot
objects
Create UpSet plots
Interactive shiny app to visualize results
Plot correlations
COBRAPlot
object and constructor
Accessor and replacement functions for facetted
slot
Plot FP curves
Accessor and replacement functions for onlyshared
slot
Accessor and replacement functions for fpr
slot
Accessor and replacement functions for pval
slot
Accessor and replacement functions for maxsplit
slot
Calculate performance measures
Accessor and replacement functions for scatter
slot
Accessor and replacement functions for padj
slot
Calculate adjusted p-values
COBRAPerformance
object and constructor
Accessor and replacement functions for fdrtprcurve
slot
Accessor and replacement functions for deviation
slot
Accessor and replacement functions for tpr
slot
Plot TPR
Accessor and replacement functions for fpc
slot
Accessor and replacement functions for fdrnbr
slot
Plot Venn diagram
Accessor and replacement functions for corr
slot
Plot TPR vs FDR
Accessor and replacement functions for fdrtpr
slot
Accessor and replacement functions for roc
slot
Plot ROC curves
Accessor function for basemethods
Accessor and replacement functions for overlap
slot
Plot scatter plots
Accessor and replacement functions for plotcolors
slot
Convert an object to another class
Accessor and replacement functions for fdrnbrcurve
slot
Reorder levels in COBRAPlot object
Example data set with three differential gene expression methods
COBRAData
object and constructor
Prepare data for plotting
Plot FPR
Plot number of significant features vs FDR
Accessor and replacement functions for score
slot
Plot deviations
Accessor and replacement functions for truth
slot
Accessor function for stratification levels
Accessor and replacement functions for splv
slot