COBRAData
, COBRAPerformance
or COBRAPlot
objectsCOBRAData
, COBRAPerformance
or
COBRAPlot
objects. COBRAData
objects are subset by features
(rows), while COBRAPerformance
and COBRAPlot
objects are subset
by methods (columns). Numeric indices are not allowed, since not all slots
may be arranged in the same order.## S3 method for class 'COBRAData':
[(x, i, j = "missing", drop = "missing")## S3 method for class 'COBRAPerformance':
[(x, i = "missing", j, drop = "missing")
## S3 method for class 'COBRAPlot':
[(x, i = "missing", j, drop = "missing")
COBRAData
, COBRAPerformance
or COBRAPlot
object.COBRAData
objects, a character vector of feature names to
retain.COBRAPerformance
and COBRAPlot
objects, a
character vector with method names to retain.data(cobradata_example) cobradata_example[c("ENSG00000000457", "ENSG00000000971", "ENSG00000000460"), ] cobraperf <- calculate_performance(cobradata_example, binary_truth = "status", aspects = "fdrtpr") cobraperf[, c("voom")] cobraplot <- prepare_data_for_plot(cobraperf) cobraplot[, c("voom")]