iClusterPlus (version 1.8.0)

gbm: GBM data

Description

This is a subset of the glioblastoma dataset from the cancer genome atlas (TCGA) GBM study (2009) used in Shen et al. (2012).

Usage

data(gbm)

Value

gbm.seg

GBM copy number segmentation results genereated by DNAcopy package.

gbm.exp

GBM gene expression data.

gbm.mut

GBM mutation data.

Format

A list object containing three data matrices: copy number, methylation and mRNA expression in 84 samples.

References

Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236