iClusterPlus (version 1.8.0)

plotRI: A function to generate reproducibility index plot.

Description

A function to generate reproducibility index plot.

Usage

plotRI(cv.fit)

Arguments

cv.fit

A tune.iCluster2 object

Value

no value returned.

References

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912. Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236

See Also

iCluster

Examples

#data(simu.datasets)
#cv.fit=alist()
#for(k in 2:5){
#  cat(paste("K=",k,sep=""),'\n')
#  cv.fit[[k]]=tune.iCluster2(datasets=simu.datasets, k,nrep=2, n.lambda=8)
#}

##Reproducibility index (RI) plot
#plotRI(cv.fit)