markdataholo

bigdfMarkPosHolo

dfMarkPosHolo

dfAlloParentMarksHolo

bigdfOfMarks3Mb

When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for
holocen. from top or bottom depending on <code>param</code> <code>origin</code>. See vignettes.
bigdfMarkPosHolo: Example data for mark position of holocentrics with column OTU
dfMarkPosHolo: Example data for mark position of holocentrics
dfAlloParentMarksHolo: Example data for mark position of GISH
bigdfOfMarks3Mb: Example data for mark position in Mb

datasets

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

markdataholo function

data.frame with columns:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, optional</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markPos</dt><dd>position from bottom or top (see parameter <code>origin</code> in plotIdiograms)</dd>
<dt>markSize</dt><dd>size of mark in micrometers or Mb</dd>
</dl>An object of class <code>data.frame</code> with 6 rows and 4 columns.
An object of class <code>data.frame</code> with 13 rows and 4 columns.
An object of class <code>data.frame</code> with 12 rows and 5 columns.

Format

Mark Positional data - Holocen. — markdataholo

Mark Positional data - Holocen.

markdataholo: Mark Positional data - Holocen.

Description

Usage

Arguments

Format

See Also