Drawing graphs

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Drawing graphs

The common bits of the three plotting functions plot.igraph, tkplot and rglplot are discussed in this manual page

Keywords
graphs
Details

There are currently three different functions in the igraph package which can draw graph in various ways:

plot.igraph does simple non-interactive 2D plotting to R devices. Actually it is an implementation of the plot generic function, so you can write plot(graph) instead of plot.igraph(graph). As it used the standard R devices it supports every output format for which R has an output device. The list is quite impressing: PostScript, PDF files, XFig files, SVG files, JPG, PNG and of course you can plot to the screen as well using the default devices, or the good-looking anti-aliased Cairo device. See plot.igraph for some more information.

tkplot does interactive 2D plotting using the tcltk package. It can only handle graphs of moderate size, a thousend vertices is probably already too many. Some parameters of the plotted graph can be changed interactively after issuing the tkplot command: the position, color and size of the vertices and the color and width of the edges. See tkplot for details. rglplot is an experimental function to draw graphs in 3D using OpenGL. See rglplot for some more information.

Please also check the examples below.

How to specify graphical parameters

There are three ways to give values to the parameters described below, in section 'Parameters'. We give these three ways here in the order of their precedence.

The first method is to supply named arguments to the plotting commands: plot.igraph, tkplot or rglplot. Parameters for vertices start with prefix vertex., parameters for edges have prefix edge., and global parameters have now prefix. Eg. the color of the vertices can be given via argument vertex.color, whereas edge.color sets the color of the edges. layout gives the layout of the graphs.

The second way is to assign vertex, edge and graph attributes to the graph. These attributes have now prefix, ie. the color of the vertices is taken from the color vertex attribute and the color of the edges from the color edge attribute. The layout of the graph is given by the layout graph attribute. (Always assuming that the corresponding command argument is not present.) Setting vertex and edge attributes are handy if you want to assign a given look to a graph, attributes are saved with the graph is you save it with save or in GraphML format with write.graph, so the graph will have the same look after loading it again.

If a parameter is not given in the command line, and the corresponding vertex/edge/graph attribute is also missing then the general igraph parameters handled by igraph.par are also checked. Vertex parameters have prefix vertex., edge parameters are prefixed with edge., general parameters like layout are prefixed with plot. These parameters are useful if you want all or most of your graphs to have the same look, vertex size, vertex color, etc. Then you don't need to set these at every plotting, and you also don't need to assign vertex/edge attributes to every graph.

If the value of a parameter is not specified by any of the three ways described here, its default valued is used, as given in the source code.

Different parameters can have different type, eg. vertex colors can be given as a character vector with color names, or as an integer vector with the color numbers from the current palette. Different types are valid for different parameters, this is discussed in detail in the next section. It is however always true that the parameter can always be a function object in which it will be called with the graph as its single argument to get the proper value of the parameter. (If the function returns another function object that will not be called again...)

The list of parameters

Vertex parameters first, note that the vertex. prefix needs to be added if they are used as an argument or when setting via igraph.par. The value of the parameter may be scalar valid for every vertex or a vector with a separate value for each vertex. (Shorter vectors are recycled.)

  • size
{The size of the vertex, a numeric scalar or vector, in the latter case each vertex sizes may differ. This vertex sizes are scaled in order have about the same size of vertices for a given value for all three plotting commands. It does not need to be an integer number.

The default value is 15. This is big enough to place short labels on vertices.} color{The fill color of the vertex. If it is numeric then the current palette is used, see palette. If it is a character vector then it may either contain named colors or RGB specified colors with three or four bytes. All strings starting with #}} are assumed to be RGB color specifications. It is possible to mix named color and RGB colors. Note that tkplot ignores the fourth byte (alpha channel) in the RGB color specification.

The default value is SkyBlue2. frame.color{The color of the frame of the vertices, the same formats are allowed as for the fill color.

By default it is black. } label{The vertex labels. They will be converted to character. Specify NA to omit vertex labels.

The default vertex labels are the vertex ids. } label.family{The font family to be used for vertex labels. As different plotting commands can used different fonts, they interpret this parameter different ways. The basic notation is, however, understood by both plot.igraph and tkplot. rglplot does not support fonts at all right now, it ignores this parameter completely.

For plot.igraph this parameter is simply passed to text as argument family.

For tkplot some conversion is performed. If this parameter is the name of an exixting Tk font, then that font is used and the label.font and label.cex parameters are ignored complerely. If it is one of the base families (serif, sans, mono) then Times, Helvetica or Courier fonts are used, there are guaranteed to exist on all systems. For the symbol base family we used the symbol font is available, otherwise the first font which has symbol in its name. If the parameter is not a name of the base families and it is also not a named Tk font then we pass it to tkfont.create and hope the user knows what she is doing. The label.font and label.cex parameters are also passed to tkfont.create in this case.

The default value is serif. } label.font{The font within the font family to use for the vertex labels. It is interpreted the same way as the the font graphical parameter: 1 is plain text, 2 is bold face, 3 is italic, 4 is bold and italic and 5 specifies the symbol font.

For plot.igraph this parameter is simply passed to text.

For tkplot, if the label.family parameter is not the name of a Tk font then this parameter is used to set whether the newly created font should be italic and/or boldface. Otherwise it is ignored.

For rglplot it is ignored.

The default value is 1. } label.cex{The font size for vertex labels. It is interpreted as a multiplication factor of some device-dependent base font size.

For plot.igraph it is simply passed to text as argument cex.

For tkplot it is multiplied by 12 and then used as the size argument for tkfont.create. The base font is thus 12 for tkplot.

For rglplot it is ignored.

The default value is 1. } label.dist{ The distance of the label from the center of the vertex. If it is 0 then the label is centered on the vertex. If it is 1 then the label is displayed beside the vertex.

The default value is 0. } label.degree{ It defines the position of the vertex labels, relative to the center of the vertices. It is interpreted as an angle in radian, zero means to the right, and pi means to the left, up is -pi/2 and down is pi/2.

The default value is -pi/4. } label.color{The color of the labels, see the color vertex parameter discussed earlier for the possible values.

The default value is black. }

Edge parameters require to add the edge. prefix when used as arguments or set by igraph.par. The edge parameters:

  • color
{The color of the edges, see the color vertex parameter for the possible values.

By default this parameter is darkgrey. } width{The width of the edges.

The default value is 1. } arrow.size{The size of the arrows. Currently this is a constant, so it is the same for every edge. If a vector is submitted then only the first element is used, ie. if this is taken from an edge attribute then only the attribute of the first edge is used for all arrows. This will likely change in the future.

The default value is 1. } lty{The line type for the edges. Almost the same format is accepted as for the standard graphics par, 0 and blank mean no edges, 1 and solid are for solid lines, the other possible values are: 2 (dashed), 3 (dotted), 4 (dotdash), 5 (longdash), 6 (twodash).

tkplot also accepts standard Tk line type strings, it does not however support blank lines, instead of type 0 type 1, ie. solid lines will be drawn. This argument is ignored for rglplot.

The default value is type 1, a solid line. } label{The edge labels. They will be converted to character. Specify NA to omit edge labels.

Edge labels are omitted by default.} label.family{Font family of the edge labels. See the vertex parameter with the same name for the details.} label.font{The font for the edge labels. See the corresponding vertex parameter discussed earlier for details.} label.cex{The font size for the edge labels, see the corresponding vertex parameter for details.} label.color{The color of the edge labels, see the color vertex parameters on how to specify colors. } arrow.mode{This parameter can be used to specify for which edges should arrows be drawn. If this parameter is given by the user (in either of the three ways) then it specifies which edges will have forward, backward arrows, or both, or no arrows at all. As usual, this parameter can be a vector or a scalar value. It can be an integer or character type. If it is integer then 0 means no arrows, 1 means backward arrows, 2 is for forward arrows and 3 for both. If it is a character vector then < and <- specify backward, > and -> forward arrows and <> and <-> stands for both arrows. All other values mean no arrows, perhaps you should use - or -- to specify no arrows.

Hint: this parameter can be used as a cheap solution for drawing mixed graphs: graphs in which some edges are directed some are not. If you want do this, then please create a directed graph, because as of version 0.4 the vertex pairs in the edge lists can be swapped in undirected graphs.

By default, no arrows will be drawn for undirected graphs, and for directed graphs, an arrow will be drawn for each edge, according to its direction. This is not very surprising, it is the expected behavior. } loop.angle{Gives the angle in radian for plotting loop edges. See the label.dist vertex parameter to see how this is interpreted.

The default value is 0. } loop.angle2{Gives the second angle in radian for plotting loop edges. This is only used in 3D, loop.angle is enough in 2D.

The default value is 0. } }

Other parameters:

  • layout
{ Either a function or a numeric matrix. It specifies how the vertices will be placed on the plot. If it is a numeric matrix, then the matrix has to have one line for each vertex, specifying its coordinates. The matrix should have at least two columns, for the x and y coordinates, and it can also have third column, this will be the z coordinate for 3D plots and it is ignored for 2D plots.

If a two column matrix is given for the 3D plotting function rglplot then the third column is assumed to be 1 for each vertex.

If layout is a function, this function will be called with the graph as the single parameter to determine the actual coordinates. The function should return a matrix with two or three columns. For the 2D plots the third column is ignored.

The default value is layout.random, ie. a function returning with 2D random placement.} margin{The amount of empty space below, over, at the left and right of the plot, it is a numeric vector of length four. Usually values between 0 and 0.5 are meaningful, but negative values are also possible, that will make the plot zoom in to a part of the graph. If it is shorter than four then it is recycled.

rglplot does not support this parameter, as it can zoom in and out the graph in a more flexible way. Its default value is 0. }

See Also

plot.igraph, tkplot, rglplot, igraph.par

Aliases
  • igraph.plotting
Examples
# plotting a simple ring graph, all default parameters, except the layout
g <- graph.ring(10)
g <- set.graph.attribute(g, "layout", layout.circle)
plot(g)
tkplot(g)
rglplot(g)

# plotting a random graph, set the parameters in the command arguments
g <- barabasi.game(100)
plot(g, layout=layout.fruchterman.reingold, vertex.size=4,
     vertex.label.dist=0.5, vertex.color="red", edge.arrow.size=0.5)

# plot a random graph, different color for each component
g <- erdos.renyi.game(100, 1/100)
comps <- clusters(g)$membership
colbar <- rainbow(max(comps)+1)
V(g)$color <- colbar[comps+1]
plot(g, layout=layout.fruchterman.reingold, vertex.size=5, vertex.label=NA)

# plot communities in a graph
g <- graph.full(5)g <- add.edges(g, c(0,5, 0,10, 5,10))
com <- spinglass.community(g, spins=5)
V(g)$color <- com$membership+1
g <- set.graph.attribute(g, "layout", layout.kamada.kawai(g))
plot(g, vertex.label.dist=1.5)

# draw a bunch of trees, fix layout
igraph.par("plot.layout", layout.reingold.tilford)
plot(graph.tree(20, 2))
plot(graph.tree(50, 3), vertex.size=3, vertex.label=NA)
tkplot(graph.tree(50, 2), mode="undirected", vertex.size=10, vertex.color="green")
Documentation reproduced from package igraph, version 0.4.4, License: GPL version 2 or later (June, 1991)

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