igraph v1.2.3

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Network Analysis and Visualization

Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

Functions in igraph

Name Description
as_long_data_frame Convert a graph to a long data frame
automorphisms Number of automorphisms
all_simple_paths List all simple paths from one source
as.directed Convert between directed and undirected graphs
as.igraph Conversion to igraph
categorical_pal Palette for categories
alpha_centrality Find Bonacich alpha centrality scores of network positions
add_layout_ Add layout to graph
cluster_label_prop Finding communities based on propagating labels
estimate_betweenness Vertex and edge betweenness centrality
complementer Complementer of a graph
component_wise Component-wise layout
cluster_leading_eigen Community structure detecting based on the leading eigenvector of the community matrix
add_vertices Add vertices to a graph
arpack_defaults ARPACK eigenvector calculation
articulation_points Articulation points of a graph
are_adjacent Are two vertices adjacent?
consensus_tree Create a consensus tree from several hierarchical random graph models
console The igraph console
contract Contract several vertices into a single one
constraint Burt's constraint
distance_table Shortest (directed or undirected) paths between vertices
curve_multiple Optimal edge curvature when plotting graphs
decompose Decompose a graph into components
diverging_pal Diverging palette
dim_select Dimensionality selection for singular values using profile likelihood.
as_adj_list Adjacency lists
centr_betw Centralize a graph according to the betweenness of vertices
centr_betw_tmax Theoretical maximum for betweenness centralization
cluster_fast_greedy Community structure via greedy optimization of modularity
eccentricity Eccentricity of the vertices in a graph
igraph-package The igraph package
cluster_infomap Infomap community finding
as_adjacency_matrix Convert a graph to an adjacency matrix
add_edges Add edges to a graph
disjoint_union Disjoint union of graphs
as_ids Convert a vertex or edge sequence to an ordinary vector
cluster_spinglass Finding communities in graphs based on statistical meachanics
cluster_walktrap Community strucure via short random walks
component_distribution Connected components of a graph
edge Helper function for adding and deleting edges
fit_power_law Fitting a power-law distribution function to discrete data
assortativity Assortativity coefficient
diversity Graph diversity
E Edges of a graph
compose Compose two graphs as binary relations
dominator_tree Dominator tree
erdos.renyi.game Generate random graphs according to the Erdos-Renyi model
authority_score Kleinberg's authority centrality scores.
fit_hrg Fit a hierarchical random graph model
V Vertices of a graph
as_edgelist Convert a graph to an edge list
as_graphnel Convert igraph graphs to graphNEL objects from the graph package
centr_degree Centralize a graph according to the degrees of vertices
centr_degree_tmax Theoretical maximum for degree centralization
centralize Centralization of a graph
bipartite_mapping Decide whether a graph is bipartite
bipartite_projection Project a bipartite graph
cliques The functions find cliques, ie. complete subgraphs in a graph
cluster_louvain Finding community structure by multi-level optimization of modularity
centr_clo Centralize a graph according to the closeness of vertices
count_subgraph_isomorphisms Count the isomorphic mappings between a graph and the subgraphs of another graph
graph_attr Graph attributes of a graph
centr_clo_tmax Theoretical maximum for closeness centralization
get.edge.ids Find the edge ids based on the incident vertices of the edges
graph_version Igraph data structure versions
cluster_edge_betweenness Community structure detection based on edge betweenness
closeness Closeness centrality of vertices
compare Compares community structures using various metrics
membership Functions to deal with the result of network community detection
graph_attr_names List names of graph attributes
cluster_optimal Optimal community structure
count_triangles Find triangles in graphs
delete_edges Delete edges from a graph
difference Difference of two sets
graphlet_basis Graphlet decomposition of a graph
difference.igraph Difference of graphs
convex_hull Convex hull of a set of vertices
coreness K-core decomposition of graphs
delete_graph_attr Delete a graph attribute
graph_from_graphnel Convert graphNEL objects from the graph package to igraph
graph_from_incidence_matrix Create graphs from an incidence matrix
identical_graphs Decide if two graphs are identical
edge_attr<- Set one or more edge attributes
igraph-attribute-combination How igraph functions handle attributes when the graph changes
edge_attr Query edge attributes of a graph
delete_vertex_attr Delete a vertex attribute
indent_print Indent a printout
bfs Breadth-first search
eigen_centrality Find Eigenvector Centrality Scores of Network Positions
as_incidence_matrix Incidence matrix of a bipartite graph
embed_adjacency_matrix Spectral Embedding of Adjacency Matrices
head_of Head of the edge(s) in a graph
delete_vertices Delete vertices from a graph
dfs Depth-first search
graph_from_atlas Create a graph from the Graph Atlas
girth Girth of a graph
diameter Diameter of a graph
gorder Order (number of vertices) of a graph
intersection Intersection of two or more sets
head_print Print the only the head of an R object
biconnected_components Biconnected components
is_degseq Check if a degree sequence is valid for a multi-graph
is_dag Directed acyclic graphs
graph_from_isomorphism_class Create a graph from an isomorphism class
c.igraph.es Concatenate edge sequences
c.igraph.vs Concatenate vertex sequences
edge_attr_names List names of edge attributes
isomorphisms Calculate all isomorphic mappings between the vertices of two graphs
as_data_frame Creating igraph graphs from data frames or vice-versa
graph_from_lcf Creating a graph from LCF notation
hrg-methods Hierarchical random graphs
ends Incident vertices of some graph edges
embed_laplacian_matrix Spectral Embedding of the Laplacian of a Graph
edge_connectivity Edge connectivity.
groups Groups of a vertex partitioning
centr_eigen Centralize a graph according to the eigenvector centrality of vertices
centr_eigen_tmax Theoretical maximum for betweenness centralization
hrg Create a hierarchical random graph from an igraph graph
igraph-minus Delete vertices or edges from a graph
graph_ Convert object to a graph
cocitation Cocitation coupling
igraph_demo Run igraph demos, step by step
graph_attr<- Set all or some graph attributes
graph_from_edgelist Create a graph from an edge list matrix
graph_from_graphdb Load a graph from the graph database for testing graph isomorphism.
ivs Independent vertex sets
igraph-vs-attributes Query or set attributes of the vertices in a vertex sequence
intersection.igraph Intersection of graphs
gsize The size of the graph (number of edges)
cohesive_blocks Calculate Cohesive Blocks
igraph-dollar Getting and setting graph attributes, shortcut
count_motifs Graph motifs
igraph_options Parameters for the igraph package
count_isomorphisms Count the number of isomorphic mappings between two graphs
layout.svd SVD layout, this was removed from igraph
intersection.igraph.es Intersection of edge sequences
layout_with_dh The Davidson-Harel layout algorithm
layout_ Graph layouts
incident Incident edges of a vertex in a graph
igraph-es-indexing Indexing edge sequences
degree Degree and degree distribution of the vertices
layout_with_drl The DrL graph layout generator
is_separator Vertex separators
delete_edge_attr Delete an edge attribute
is_weighted Weighted graphs
laplacian_matrix Graph Laplacian
layout.reingold.tilford Deprecated layout functions
igraph-es-indexing2 Select edges and show their metadata
layout_as_bipartite Simple two-row layout for bipartite graphs
igraph-es-attributes Query or set attributes of the edges in an edge sequence
difference.igraph.es Difference of edge sequences
is_directed Check whether a graph is directed
incident_edges Incident edges of multiple vertices in a graph
difference.igraph.vs Difference of vertex sequences
layout_as_star Generate coordinates to place the vertices of a graph in a star-shape
intersection.igraph.vs Intersection of vertex sequences
make_full_graph Create a full graph
make_graph Create an igraph graph from a list of edges, or a notable graph
igraph_test Run package tests
igraph_version Query igraph's version string
dyad_census Dyad census of a graph
make_kautz_graph Kautz graphs
make_ Make a new graph
is_chordal Chordality of a graph
is_bipartite Create a bipartite graph
is_igraph Is this object an igraph graph?
keeping_degseq Graph rewiring while preserving the degree distribution
knn Average nearest neighbor degree
is_min_separator Minumal vertex separators
make_lattice Create a lattice graph
layout.fruchterman.reingold.grid Grid Fruchterman-Reingold layout, this was removed from igraph
layout.spring Spring layout, this was removed from igraph
is_graphical Is a degree sequence graphical?
layout_with_lgl Large Graph Layout
layout_with_mds Graph layout by multidimensional scaling
layout_on_sphere Graph layout with vertices on the surface of a sphere
max_cardinality Maximum cardinality search
isomorphic Decide if two graphs are isomorphic
each_edge Rewires the endpoints of the edges of a graph to a random vertex
min_cut Minimum cut in a graph
merge_coords Merging graph layouts
edge_density Graph density
ego_size Neighborhood of graph vertices
graph_from_adj_list Create graphs from adjacency lists
layout_randomly Randomly place vertices on a plane or in 3d space
isomorphism_class Isomorphism class of a graph
layout_nicely Choose an appropriate graph layout algorithm automatically
layout_on_grid Simple grid layout
graph_from_adjacency_matrix Create graphs from adjacency matrices
graph_from_literal Creating (small) graphs via a simple interface
graph_id Get the id of a graph
layout_with_fr The Fruchterman-Reingold layout algorithm
layout_with_gem The GEM layout algorithm
hrg_tree Create an igraph graph from a hierarchical random graph model
layout_with_sugiyama The Sugiyama graph layout generator
hub_score Kleinberg's hub centrality scores.
max_flow Maximum flow in a graph
igraph-vs-indexing Indexing vertex sequences
igraph-vs-indexing2 Select vertices and show their metadata
local_scan Compute local scan statistics on graphs
make_chordal_ring Create an extended chordal ring graph
is_named Named graphs
is_printer_callback Is this a printer callback?
make_clusters Creates a communities object.
make_de_bruijn_graph De Bruijn graphs
print.nexusDatasetInfo Query and download from the Nexus network repository
+.igraph Add vertices, edges or another graph to a graph
layout_as_tree The Reingold-Tilford graph layout algorithm
norm_coords Normalize coordinates for plotting graphs
layout_in_circle Graph layout with vertices on a circle.
power_centrality Find Bonacich Power Centrality Scores of Network Positions
make_empty_graph A graph with no edges
random_walk Random walk on a graph
layout_with_graphopt The graphopt layout algorithm
mst Minimum spanning tree
path Helper function to add or delete edges along a path
permute Permute the vertices of a graph
match_vertices Match Graphs given a seeding of vertex correspondences
read_graph Reading foreign file formats
sample_bipartite Bipartite random graphs
neighbors Neighboring (adjacent) vertices in a graph
sample_correlated_gnp Generate a new random graph from a given graph by randomly adding/removing edges
is_matching Graph matching
make_line_graph Line graph of a graph
make_ring Create a ring graph
printer_callback Create a printer callback function
layout_with_kk The Kamada-Kawai layout algorithm
printr Better printing of R packages
plot.igraph Plotting of graphs
min_separators Minimum size vertex separators
make_full_bipartite_graph Create a full bipartite graph
plot.sir Plotting the results on multiple SIR model runs
min_st_separators Minimum size vertex separators
make_full_citation_graph Create a complete (full) citation graph
%>% Magrittr's pipes
r_pal The default R palette
Drawing graphs Drawing graphs
radius Radius of a graph
sample_forestfire Forest Fire Network Model
make_star Create a star graph, a tree with n vertices and n - 1 leaves
sample_gnm Generate random graphs according to the G(n,m) Erdos-Renyi model
predict_edges Predict edges based on a hierarchical random graph model
make_tree Create tree graphs
modularity.igraph Modularity of a community structure of a graph
print.igraph.es Print an edge sequence to the screen
sample_smallworld The Watts-Strogatz small-world model
motifs Graph motifs
normalize Normalize layout
sample_sphere_surface Sample vectors uniformly from the surface of a sphere
sample_dirichlet Sample from a Dirichlet distribution
sample_dot_product Generate random graphs according to the random dot product graph model
print.igraph.vs Show a vertex sequence on the screen
page_rank The Page Rank algorithm
reciprocity Reciprocity of graphs
sequential_pal Sequential palette
rep.igraph Replicate a graph multiple times
print.igraph Print graphs to the terminal
rev.igraph.es Reverse the order in an edge sequence
rev.igraph.vs Reverse the order in a vertex sequence
plot_dendrogram Community structure dendrogram plots
print.igraphHRG Print a hierarchical random graph model to the screen
print.igraphHRGConsensus Print a hierarchical random graph consensus tree to the screen
sample_correlated_gnp_pair Sample a pair of correlated G(n,p) random graphs
rewire Rewiring edges of a graph
plot_dendrogram.igraphHRG HRG dendrogram plot
set_edge_attr Set edge attributes
subcomponent In- or out- component of a vertex
rglplot 3D plotting of graphs with OpenGL
sample_sbm Sample stochastic block model
sample_seq Sampling a random integer sequence
subgraph Subgraph of a graph
running_mean Running mean of a time series
sample_ Sample from a random graph model
sample_degseq Generate random graphs with a given degree sequence
scan_stat Scan statistics on a time series of graphs
sample_gnp Generate random graphs according to the G(n,p) Erdos-Renyi model
sample_grg Geometric random graphs
topo_sort Topological sorting of vertices in a graph
scg-method Spectral Coarse Graining
sample_k_regular Create a random regular graph
split_join_distance Split-join distance of two community structures
transitivity Transitivity of a graph
sample_fitness Random graphs from vertex fitness scores
srand Deprecated function, used to set random seed of the C library's RNG
vertex_attr Query vertex attributes of a graph
vertex_attr_names List names of vertex attributes
union.igraph.es Union of edge sequences
without_loops Constructor modifier to drop loop edges
sample_last_cit Random citation graphs
sample_fitness_pl Scale-free random graphs, from vertex fitness scores
sample_hrg Sample from a hierarchical random graph model
sample_islands A graph with subgraphs that are each a random graph.
union.igraph.vs Union of vertex sequences
without_multiples Constructor modifier to drop multiple edges
sample_motifs Graph motifs
sample_pa_age Generate an evolving random graph with preferential attachment and aging
sample_pa Generate scale-free graphs according to the Barabasi-Albert model
sample_pref Trait-based random generation
scg_group SCG Problem Solver
scg_semi_proj Semi-Projectors
time_bins.sir SIR model on graphs
sample_growing Growing random graph generation
scg All-in-one Function for the SCG of Matrices and Graphs
scg_eps Error of the spectral coarse graining (SCG) approximation
set_graph_attr Set a graph attribute
vertex_connectivity Vertex connectivity.
st_cuts List all (s,t)-cuts of a graph
which_multiple Find the multiple or loop edges in a graph
which_mutual Find mutual edges in a directed graph
st_min_cuts List all minimum \((s,t)\)-cuts of a graph
sample_hierarchical_sbm Sample the hierarchical stochastic block model
spectrum Eigenvalues and eigenvectors of the adjacency matrix of a graph
set_vertex_attr Set vertex attributes
subgraph_centrality Find subgraph centrality scores of network positions
[.igraph Query and manipulate a graph as it were an adjacency matrix
subgraph_isomorphic Decide if a graph is subgraph isomorphic to another one
with_edge_ Constructor modifier to add edge attributes
simplified Constructor modifier to drop multiple and loop edges
[[.igraph Query and manipulate a graph as it were an adjacency list
simplify Simple graphs
stochastic_matrix Stochastic matrix of a graph
strength Strength or weighted vertex degree
sample_sphere_volume Sample vectors uniformly from the volume of a sphere
triad_census Triad census, subgraphs with three vertices
sample_traits_callaway Graph generation based on different vertex types
tkigraph Experimental basic igraph GUI
shapes Various vertex shapes when plotting igraph graphs
tkplot Interactive plotting of graphs
union Union of two or more sets
unfold_tree Convert a general graph into a forest
unique.igraph.es Remove duplicate edges from an edge sequence
unique.igraph.vs Remove duplicate vertices from a vertex sequence
union.igraph Union of graphs
with_graph_ Constructor modifier to add graph attributes
similarity Similarity measures of two vertices
upgrade_graph Igraph data structure versions
vertex Helper function for adding and deleting vertices
write_graph Writing the graph to a file in some format
with_igraph_opt Run code with a temporary igraph options setting
tail_of Tails of the edge(s) in a graph
subgraph_isomorphisms All isomorphic mappings between a graph and subgraphs of another graph
vertex_attr<- Set one or more vertex attributes
Pie charts as vertices Using pie charts as vertices in graph plots
with_vertex_ Constructor modifier to add vertex attributes
without_attr Construtor modifier to remove all attributes from a graph
adjacent_vertices Adjacent vertices of multiple vertices in a graph
as_membership Declare a numeric vector as a membership vector
canonical_permutation Canonical permutation of a graph
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License GPL (>= 2)
URL http://igraph.org
SystemRequirements gmp (optional), libxml2 (optional), glpk (optional)
BugReports https://github.com/igraph/igraph/issues
Encoding UTF-8
Collate 'adjacency.R' 'auto.R' 'assortativity.R' 'attributes.R' 'basic.R' 'bipartite.R' 'centrality.R' 'centralization.R' 'cliques.R' 'cocitation.R' 'cohesive.blocks.R' 'community.R' 'components.R' 'console.R' 'conversion.R' 'data_frame.R' 'decomposition.R' 'degseq.R' 'demo.R' 'embedding.R' 'epi.R' 'fit.R' 'flow.R' 'foreign.R' 'games.R' 'glet.R' 'hrg.R' 'igraph-package.R' 'incidence.R' 'indexing.R' 'interface.R' 'iterators.R' 'layout.R' 'layout_drl.R' 'lazyeval.R' 'make.R' 'minimum.spanning.tree.R' 'motifs.R' 'nexus.R' 'operators.R' 'other.R' 'package.R' 'palette.R' 'par.R' 'paths.R' 'plot.R' 'plot.common.R' 'plot.shapes.R' 'pp.R' 'print.R' 'printr.R' 'random_walk.R' 'rewire.R' 'scan.R' 'scg.R' 'sgm.R' 'similarity.R' 'simple.R' 'sir.R' 'socnet.R' 'sparsedf.R' 'structural.properties.R' 'structure.info.R' 'test.R' 'tkplot.R' 'topology.R' 'triangles.R' 'utils.R' 'uuid.R' 'versions.R' 'weakref.R' 'zzz-deprecate.R'
RoxygenNote 6.1.1
NeedsCompilation yes
Packaged 2019-02-04 10:32:21 UTC; gaborcsardi
Repository CRAN
Date/Publication 2019-02-10 14:43:10 UTC

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