inbreedR v0.3.0

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Analysing Inbreeding Based on Genetic Markers

A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) based on microsatellite and SNP markers.

Functions in inbreedR

Name Description
simulate_g2 Simulate $g2$
sMLH Calculate multilocus heterozygosity (MLH)
inbreedR inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
convert_raw Genotype format converter
HHC Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
check_data Checks the data for consistency with the inbreedR working format.
r2_Wf Expected r2 between inbreeding level (f) and fitness (W)
g2_microsats Estimating g2 from microsatellite data
print.inbreed Print an inbreed object
r2_hf Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)
plot.inbreed Plot an inbreed object
mouse_msats Oldfield mouse microsatellite data
simulate_r2_hf Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets
MLH Calculate multilocus heterozygosity (MLH)
bodyweight Oldfield mouse bodyweight data
g2_snps Estimating g2 from larger datasets, such as SNPs
mouse_snps Oldfield mouse SNP data
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License GPL-2
LazyData true
VignetteBuilder knitr
RoxygenNote 5.0.1
NeedsCompilation no
Packaged 2015-11-30 09:33:25 UTC; martin
Repository CRAN
Date/Publication 2015-11-30 15:53:04

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