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inbreedR (version 0.3.0)
Analysing Inbreeding Based on Genetic Markers
Description
A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) based on microsatellite and SNP markers.
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Install
install.packages('inbreedR')
Monthly Downloads
335
Version
0.3.0
License
GPL-2
Maintainer
Martin A Stoffel
Last Published
November 30th, 2015
Functions in inbreedR (0.3.0)
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simulate_g2
Simulate $g2$
sMLH
Calculate multilocus heterozygosity (MLH)
inbreedR
inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
convert_raw
Genotype format converter
HHC
Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
check_data
Checks the data for consistency with the inbreedR working format.
r2_Wf
Expected r2 between inbreeding level (f) and fitness (W)
g2_microsats
Estimating g2 from microsatellite data
print.inbreed
Print an inbreed object
r2_hf
Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)
plot.inbreed
Plot an inbreed object
mouse_msats
Oldfield mouse microsatellite data
simulate_r2_hf
Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets
MLH
Calculate multilocus heterozygosity (MLH)
bodyweight
Oldfield mouse bodyweight data
g2_snps
Estimating g2 from larger datasets, such as SNPs
mouse_snps
Oldfield mouse SNP data