inbreedR v0.3.0
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Analysing Inbreeding Based on Genetic Markers
A framework for analysing inbreeding and heterozygosity-fitness
correlations (HFCs) based on microsatellite and SNP markers.
Functions in inbreedR
| Name | Description | |
| simulate_g2 | Simulate $g2$ | |
| sMLH | Calculate multilocus heterozygosity (MLH) | |
| inbreedR | inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers. | |
| convert_raw | Genotype format converter | |
| HHC | Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH) | |
| check_data | Checks the data for consistency with the inbreedR working format. | |
| r2_Wf | Expected r2 between inbreeding level (f) and fitness (W) | |
| g2_microsats | Estimating g2 from microsatellite data | |
| print.inbreed | Print an inbreed object | |
| r2_hf | Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f) | |
| plot.inbreed | Plot an inbreed object | |
| mouse_msats | Oldfield mouse microsatellite data | |
| simulate_r2_hf | Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets | |
| MLH | Calculate multilocus heterozygosity (MLH) | |
| bodyweight | Oldfield mouse bodyweight data | |
| g2_snps | Estimating g2 from larger datasets, such as SNPs | |
| mouse_snps | Oldfield mouse SNP data | |
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Details
| License | GPL-2 |
| LazyData | true |
| VignetteBuilder | knitr |
| RoxygenNote | 5.0.1 |
| NeedsCompilation | no |
| Packaged | 2015-11-30 09:33:25 UTC; martin |
| Repository | CRAN |
| Date/Publication | 2015-11-30 15:53:04 |
| depends | base (>= 3.2.1) , R (>= 3.2.1) |
| imports | data , data.table (>= 1.9.4) , graphics , Hmisc , parallel , scales , stats |
| suggests | knitr , testthat (>= 0.10.0) |
| Contributors | Martin A Stoffel, Mareike Esser |
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