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inbreedR (version 0.3.0)

Analysing Inbreeding Based on Genetic Markers

Description

A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) based on microsatellite and SNP markers.

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Version

Install

install.packages('inbreedR')

Monthly Downloads

286

Version

0.3.0

License

GPL-2

Maintainer

Martin A Stoffel

Last Published

November 30th, 2015

Functions in inbreedR (0.3.0)

simulate_g2

Simulate $g2$

sMLH

Calculate multilocus heterozygosity (MLH)

inbreedR

inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.

convert_raw

Genotype format converter

HHC

Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)

check_data

Checks the data for consistency with the inbreedR working format.

r2_Wf

Expected r2 between inbreeding level (f) and fitness (W)

g2_microsats

Estimating g2 from microsatellite data

print.inbreed

Print an inbreed object

r2_hf

Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)

plot.inbreed

Plot an inbreed object

mouse_msats

Oldfield mouse microsatellite data

simulate_r2_hf

Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets

MLH

Calculate multilocus heterozygosity (MLH)

bodyweight

Oldfield mouse bodyweight data

g2_snps

Estimating g2 from larger datasets, such as SNPs

mouse_snps

Oldfield mouse SNP data