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inveRsion (version 1.20.0)

Inversions in genotype data

Description

Package to find genetic inversions in genotype (SNP array) data.

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Version

Version

1.20.0

License

GPL (>= 2)

Maintainer

Alejandro Caceres

Last Published

February 15th, 2017

Functions in inveRsion (1.20.0)

getROIs-methods

Extracts regions of possible inversion events from "scan"
codeHaplo

Codes haplotypes into decimal integers
inveRsion-internal

Internal inveRsion objects
setUpGenoDatFile

Loads genotype data onto R
hapCode

Sample data set of class HaploCode
getInv-methods

gets "scan" into a matrix
inversion-class

Class "inversion"
scan-class

Class "scan"
accuracy-class

Class "accuracy"
ac

Sample data set of class accuracy
GenoDat-class

Class "GenoDat"
invList

Sample data of class inversionList
gDat

Sample data of class genoDat
accBic

accBic computes "accuracy" from "inversionList"
HaploCode-class

Class "HaploCode"
listInv-methods

Constructor of class inversionList
inversionList-class

Class "inversionList"
scanInv

Inversion scan
getClassif-methods

Overall classification
inveRsion-package

Detection of Genetic inversions using SNP-array data
GenoDatROI-class

Class "GenoDatROI"
scanRes

Sample data set of class scan