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inveRsion (version 1.20.0)
Inversions in genotype data
Description
Package to find genetic inversions in genotype (SNP array) data.
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Version
Version
1.20.0
1.18.0
1.16.0
1.14.0
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Version
1.20.0
License
GPL (>= 2)
Maintainer
Alejandro Caceres
Last Published
May 12th, 2011
Functions in inveRsion (1.20.0)
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getROIs-methods
Extracts regions of possible inversion events from "scan"
codeHaplo
Codes haplotypes into decimal integers
inveRsion-internal
Internal inveRsion objects
setUpGenoDatFile
Loads genotype data onto R
hapCode
Sample data set of class HaploCode
getInv-methods
gets "scan" into a matrix
inversion-class
Class "inversion"
scan-class
Class "scan"
accuracy-class
Class "accuracy"
ac
Sample data set of class accuracy
GenoDat-class
Class "GenoDat"
invList
Sample data of class inversionList
gDat
Sample data of class genoDat
accBic
accBic computes "accuracy" from "inversionList"
HaploCode-class
Class "HaploCode"
listInv-methods
Constructor of class inversionList
inversionList-class
Class "inversionList"
scanInv
Inversion scan
getClassif-methods
Overall classification
inveRsion-package
Detection of Genetic inversions using SNP-array data
GenoDatROI-class
Class "GenoDatROI"
scanRes
Sample data set of class scan