inveRsion (version 1.20.0)

getClassif-methods: Overall classification

Description

Classifies into inverted or non-inverted populations each chromosome in the sample.

Usage

getClassif(object, thBic, wROI, bin,geno,id,nmod)

Arguments

object

inversionList. List of inversions obtained from a chromosome scan.

thBic

numeric. BIC threshold above which significant segments are chosen for the final classification

wROI

numeric. ROI number from the list to select classification

bin

logic. Whether binary or continous classification is retrieved

geno

logic. Whether inversion genotype is retrieved

id

character. Vector of subject IDs

nmod

numeric. number of trial segments to be used in the classification counting from the trial segments with highest BIC downwards.

Value

numeric. Vector with values between 0 and 1 representing membership to the non-inverted and inverted population respectively.

Methods

signature(object = "inversionList")

for each of the inversions of the list, it returns the classification of each chromosome.

Details

The overall classification of chromosomes into inverted and non-inverted populations is given by the weighted average of the classifications obtained for each trial segment in the ROI, with BIC greater than thBic.

See Also

inversionList

Examples

data(invList)
r<-getClassif(invList)
head(r)