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ionflows (version 1.1)

Calculate the Number of Required Flows for Semiconductor Sequencing

Description

Two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.

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Version

Install

install.packages('ionflows')

Monthly Downloads

11

Version

1.1

License

GPL-3

Maintainer

Michael Bockmayr

Last Published

November 10th, 2014

Functions in ionflows (1.1)

chp2

An example BED file.
flowsRandom

A function to compute the percentage of covered random sequences for a given number of flows.
flowsPanel

Simulation algorithm to calculate the number of required flows for a sequence panel in BED format.
ionflows-package

Calculate the Number of Required Flows for Semiconductor Sequencing
readBed

This is a function to read BED files.