get_ptm_ppi_from_file

A string representing file name of the file containing the list of kinases.
The file should be a Tab seperated file with three columns "substrate_ac", "site_residue" and "position" without headers.
Example :
Q13619 S 10
Q8TDM6 S 1021
Q6ZRV2 S 1025
Q15121 S 104
O15164 S 1042
Q8NDI1 S 1058
P00533 S 1064
Q16555 S 107
Q8NFC6 S 1077

file_name

This function is similar to <a rd-options="" href="/link/get_ptm_ppi_from_list?package=iptmnetr&version=0.1.8" data-mini-rdoc="iptmnetr::get_ptm_ppi_from_list">get_ptm_ppi_from_list</a> except that it loads the kinases from TSV file

Provides an R interface to the 'iPTMnet' database REST API, which can be used to retrieve
Post Translational Modification (PTM) data in systems biology context. This package handles all the aspects
of communicating with the API, which involve sending the request, checking the error codes and parsing the
response in a format that is ready to integrate into existing workflows.

Sachin Gavali

iptmnetr

Interface to the 'iPTMnet' API

get_ptm_ppi_from_file function

This function is similar to <a rd-options='' href='get_ptm_ppi_from_list'>get_ptm_ppi_from_list</a> except that it loads the kinases from TSV file

get_ptm_ppi_from_file: Get post translational modification (PTM) depentdent protein-protein interaction for kinases from file

Description

Usage

Arguments

Value

Examples