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iptmnetr (version 0.1.8)

Interface to the 'iPTMnet' API

Description

Provides an R interface to the 'iPTMnet' database REST API, which can be used to retrieve Post Translational Modification (PTM) data in systems biology context. This package handles all the aspects of communicating with the API, which involve sending the request, checking the error codes and parsing the response in a format that is ready to integrate into existing workflows.

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Install

install.packages('iptmnetr')

Monthly Downloads

17

Version

0.1.8

License

MIT + file LICENSE

Issues

2

Pull Requests

0

Stars

1

Forks

0

Maintainer

Sachin Gavali

Last Published

December 5th, 2019

Functions in iptmnetr (0.1.8)

get_ptm_enzymes_from_list

Get PTM Enzymes from list
get_variants

Get variants.
search_iptmnet

Search iPTMNet
get_api_version

Get the version of iPTMnet API being used.
set_api_version

Set the version of the API to use.
set_host_url

Set the url of iPTMnet API server.
get_substrates

Get substrates.
get_ptm_ppi_from_list

Get post translational modification (PTM) depentdent protein-protein interaction for the given list of kinases.
get_ptm_ppi_from_file

Get post translational modification (PTM) depentdent protein-protein interaction for kinases from file
get_host_url

Get the url of iPTMnet API server.
TermType

TermTypes Returns a list of strings that represent the term types to be used in search_iptmnet function.
Role

Role Returns a list of strings that represent the role to be used in search_iptmnet function
get_info

Get information.
get_ppi_for_proteoforms

Get Protein-Protein interactions along with corresponding proteoforms.
get_ptm_dependent_ppi

Get Post translational modification(PTM) dependent Protein-Protein interactions.
PTMTypes

PTMTypes Returns a list of strings that represents the PTM types to be used in search_iptmnet function
get_ptm_enzymes_from_file

Get PTM Enzymes using a file
get_proteoforms

Get proteoforms