iptmnetr (version 0.1.8)

get_ptm_ppi_from_list: Get post translational modification (PTM) depentdent protein-protein interaction for the given list of kinases.

Description

Retrieve a list of post translational modification (PTM) depentdent protein-protein interaction for the given list of kinases. The kinase object should have three fields - "substrate_ac","site_residue","site_position". All with the type String

Usage

get_ptm_ppi_from_list(items)

Arguments

items

A list of kinases.

Value

A dataframe containing the PTM dependent PPI interaction information.

Examples

# NOT RUN {
kinases = list(
  list(
      substrate_ac="Q15796",
      site_residue="K",
      site_position="19"
  ),
  list(
      substrate_ac="Q15796",
      site_residue="T",
      site_position="8"
 ),
 list(
      substrate_ac="P04637",
      site_residue="K",
      site_position="120"
 )
)
ptm_dep_ppi = get_ptm_ppi_from_list(kinases)
# }