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isa2 (version 0.3.6)
The Iterative Signature Algorithm
Description
The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.
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0.3.6
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Install
install.packages('isa2')
Monthly Downloads
1,758
Version
0.3.6
License
CC BY-NC-SA 4.0
Issues
1
Pull Requests
0
Stars
6
Forks
5
Repository
https://github.com/gaborcsardi/ISA
Maintainer
Gabor Csardi
Last Published
February 21st, 2023
Functions in isa2 (0.3.6)
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isa.normalize
Normalize input data for use with ISA
isa.unique
Filter out biclusters that are very similar to each other
isa.biclust
Convert ISA modules to a Biclust class, as defined by the biclust package
generate.seeds
Generate seed vectors for the Iterative Signature Algorithm
isa.in.silico
Generate in-silico input data for biclustering algorithms
isa.iterate
The Iterative Signature Algorithm
isa2-package
The isa package
isa.option
Options for the isa package
isa
Iterative Signature Algorithm
isa.sweep
Create a hierarchical structure of ISA biclusters
ppa.in.silico
Generate in-silico input data for testing the PPA algorithm
ppa
The Ping-Pong Algorithm
robustness
Robustness of ISA biclusters and PPA co-modules
ppa.unique
Filter co-modules that are very similar to each other
ppa.iterate
The Ping-Pong Algorithm
ppa.normalize
Normalize input data for use with the PPA
plotModules
Image plots of biclusters