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isqg (version 1.2)

In Silico Quantitative Genetics

Description

Accomplish high performance simulations in quantitative genetics. The molecular genetic components are represented by R6/C++ classes and methods. Mimic the meiosis recombination and de novo genetic variability by means a count-location process (Karlin & Liberman, 1978) . The core computational algorithm is implemented using 'Boost' dynamic bitsets (Schaling, 2014) [ISBN:978-1937434366]. A mix between low and high level interfaces provides great flexibility and allows user defined extensions and a wide range of applications.

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Version

Install

install.packages('isqg')

Monthly Downloads

17

Version

1.2

License

GPL-2 | file LICENSE

Maintainer

Fernando Toledo

Last Published

February 13th, 2019

Functions in isqg (1.2)

import

Constructor of a Custom Instances of the Specimen Class
mating

Breed Simulated Individuals According to Basic Mating Schemes
ToyMap

Toy Example of a Map for in silico Quantitative Genetics
Specimen

Class providing object with methods to mimic in silico Specimens
Specie

Class providing object with methods to mimic in silico Genomes
set_specie

Constructor of Instances of the Specie Class
founder

Constructor of a Founder Instances of the Specimen Class
isqg-package

isqg: A package to perform in silico quantitative genetics
genotype

Codify Specimens' Genotypes
Trait

Class providing object with methods to mimic in silico Traits
fitness

Simulated Trait for Individuals According to Basic Models