isqg (version 1.2)

genotype: Codify Specimens' Genotypes

Description

Codify Specimens' genotypes instances as numeric codes [-1/0/1] or as character vector that keeps the phase information.

Usage

genotype(pop, phase = FALSE)

Arguments

pop

a list with instances of the R6 class Specimen.

phase

logical should the codes keep the phase.

Value

A numeric or character matrix with the codified Specimens' genotypes.

Examples

# NOT RUN {
data(ToyMap)
spc <- set_specie(ToyMap)

Aa <- founder(spc, "Aa")
aA <- spc$founder("aA")

Both <- list(Aa = Aa, aA = aA)

## different ways
genotype(Both)               # as numeric   
genotype(Both, phase = TRUE) # as character

# }