jpinfect (version 2023.2026.06)

Acquiring and Processing Data from Japan Institute for Health Security

Description

Download and post process the infectious disease case data from Japan Institute for Health Security. Also the package included ready-to-analyse datasets. See the data source website for further details .

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Version

Install

install.packages('jpinfect')

Monthly Downloads

350

Version

2023.2026.06

License

GPL (>= 3)

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/TomonoriHoshi/jpinfect

Maintainer

Tomonori Hoshi

Last Published

February 23rd, 2026

Functions in jpinfect (2023.2026.06)

place_prefecture

Place Prefecture Data

jpinfect_url_confirmed

Display dataset URLs of Confirmed Cases based on Infectious Diseases Weekly Report (IDWR)

jpinfect_merge

Merge multiple disease datasets into a unified data table

jpinfect_url_bullet

Display Infectious Diseases Weekly Report (IDWR) URLs

jpinfect_read_confirmed

Read Confirmed Case Reports from File or Directory

jpinfect_read_bullet

Import one week or more weeks of bullet reports

jpinfect_pivot

Convert data from wide format to long format for easier analysis

sex_prefecture

Sex Prefecture Data

prefecture_en

English Names of Prefectures in Japan

jpinfect_get_bullet

Download the bullet reports from the Japan Institute for Health Security (JIHS)

.ncol_check

Check Column Count to Classify Dataset Type

jpinfect_get_confirmed

Download the confirmed case datasets from the Japan Institute for Health Security (JIHS)

.col_join_rename

Prepare Column Names for Renaming Based on Dataset Type

.col_rename

Clean and Format Column Names

.col_rename_bullet

Clean and Format Column Names for bullet reports

bullet

Bullet report Data

.jpinfect_read_excels

Process Multiple Excel Files

jpinfect-package

jpinfect: Japan Institute for Health Security Infectious Disease Data in R

.jpinfect_read_excel

Process a Single Excel File