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Version
Version
1.6.2
1.6.0
1.4.0
1.2.3
1.0.5
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Version
1.6.2
License
GPL (>= 2.1)
Maintainer
Ulrich Bodenhofer
Last Published
April 28th, 2016
Functions in kebabs (1.6.2)
Search functions
MotifKernel-class
Motif Kernel Class
SVMInformation-class
SVM Information Class
KernelMatrixAccessors
KernelMatrix Accessors
computeROCandAUC
Compute Receiver Operating Characteristic And Area Under The Curve
GappyPairKernel-class
Gappy Pair Kernel Class
kebabsData
KeBABS Sequence Data
PredictionProfileAccessors
PredictionProfile Accessors
plot,PredictionProfile,missing-method
Plot Prediction Profiles, Cross Validation Result, Grid Search Performance Parameters and Receiver Operating Characteristics
BioVector-class
BioVector, DNAVector, RNAVector and AAVector Classes
kebabsCollectInfo
Collect KeBABS Package Information
CrossValidationResult-class
Cross Validation Result Class
CrossValidationResultAccessors
CrossValidationResult Accessors
KBModel-class
KeBABS Model Class
ModelSelectionResult-class
Model Selection Result Class
predictSVM
SVM Access for Training and Prediction
ControlInformation-class
KeBABS Control Information Class
showAnnotatedSeq
Annotation Specific Kernel
predict,KBModel-method
KeBABS Prediction Methods
heatmap,PredictionProfile,missing-method
Heatmap Methods
performGridSearch
KeBABS Grid Search
ExplicitRepresentation
Explicit Representation Dense and Sparse Classes
KBModelAccessors
KBModel Accessors
kebabsDemo
kebabs
evaluatePrediction
Evaluate Prediction
motifKernel
Motif Kernel
mismatchKernel
Mismatch Kernel
linearKernel
Linear Kernel
SpectrumKernel-class
Spectrum Kernel Class
performModelSelection
KeBABS Model Selection
KernelMatrix-class
Kernel Matrix Class
PredictionProfile-class
Prediction Profile Class
getPredProfMixture,BioVector-method
Calculation Of Predicition Profiles for Mixture Kernels
SymmetricPairKernel-class
Symmetric Pair Kernel Class
symmetricPairKernel
Symmetric Pair Kernel
ExplicitRepresentationAccessors
ExplicitRepresentation Accessors
MismatchKernel-class
Mismatch Kernel Class
ROCDataAccessors
ROCData Accessors
kbsvm,BioVector-method
KeBABS Training Methods
getExRep
Explict Representation
ROCData-class
ROC Data Class
SequenceKernel-class
Sequence Kernel Class
seqKernelAsChar
Sequence Kernel
performCrossValidation,KernelMatrix-method
KeBABS Cross Validation
ModelSelectionResultAccessors
ModelSelectionResult Accessors
getFeatureWeights
Feature Weights
getPredictionProfile,BioVector-method
Calculation Of Predicition Profiles
genRandBioSeqs
Generate Random Biological Sequences
gappyPairKernel
Gappy Pair Kernel
spectrumKernel
Spectrum Kernel
linWeight
Position Dependent Kernel
BioVector
DNAVector, RNAVector, AAVector Objects and BioVector Class
show.BioVector
Display Various KeBABS Objects