kebabs (version 1.6.2)

GappyPairKernel-class: Gappy Pair Kernel Class


Gappy Pair Kernel Class



Instances of this class represent a kernel object for the gappy pair kernel. The kernel considers adjacent pairs of kmers with up to m irrelevant characters between the pair. The class is derived from SequenceKernel.

References J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI:{10.1093/bioinformatics/btv176}.