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ksrlive (version 1.0)

Identify Kinase Substrate Relationships Using Dynamic Data

Description

Using this package you can combine known kinase substrate relationships with experimental data and determine active kinases and their substrates.

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Version

Install

install.packages('ksrlive')

Monthly Downloads

141

Version

1.0

License

GPL-2 | GPL-3

Maintainer

Westa Domanova

Last Published

October 19th, 2015

Functions in ksrlive (1.0)

ksrlive

Identify site specific kinase substrate relationships using dynamic data.
clust.expand

Find clusters containing core substrates
KSR.list

Create a kinase substrate relationship list from a data frame
clustering

Return clustering assignments produced by tight.clust
phosphonetwork_df

site specific kinase substrate relationship dataset
data_kin

Time course data for phosphorylation sites
random.data

Create random data