Rdocumentation
powered by
Learn R Programming
⚠️
There's a newer version (1.8) of this package.
Take me there.
lgcp (version 1.3-3)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
Copy Link
Link to current version
Version
Version
1.8
1.6
1.5
1.4
1.3-15
1.3-14
1.3-13
1.3-11
1.3-9
1.3-8
1.3-7
1.3-6
1.3-4
1.3-3
1.3-2
1.3-1
1.01
1.0
0.9-7
0.9-5
0.9-4-2
0.9-3
0.9-2
0.9-1
0.9-0
Install
install.packages('lgcp')
Monthly Downloads
854
Version
1.3-3
License
GPL-2 | GPL-3
Maintainer
Benjamin Taylor
Last Published
January 7th, 2014
Functions in lgcp (1.3-3)
Search all functions
at
at function
print.fromXYZ
print.fromXYZ function
aggregateformulaList
aggregateformulaList function
lgcpPredictSpatial
lgcpPredictSpatial function
inversebase
inversebase function
getCovParameters.list
getCovParameters.list function
affine.fromFunction
affine.fromFunction function
getZmat
getZmat function
gridfun.lgcpPredict
gridfun.lgcpPredict function
GFupdate.dump2dir
GFupdate.dump2dir function
MALAlgcpSpatial
MALAlgcpSpatial function
dump2dir
dump2dir function
getCovParameters.GPrealisation
getCovParameters.GPrealisation function
CovFunction.function
CovFunction.function function
fftinterpolate.fromFunction
fftinterpolate.fromFunction function
GAupdate.nullAverage
GAupdate.nullAverage function
MALAlgcpMultitypeSpatial.PlusPars
MALAlgcpMultitypeSpatial.PlusPars function
GFupdate.nullFunction
GFupdate.nullFunction function
EvaluatePrior
EvaluatePrior function
GFfinalise.dump2dir
GFfinalise.dump2dir function
bt.scalar
bt.scalar function
getup
getup function
affine.SpatialPolygonsDataFrame
affine.SpatialPolygonsDataFrame function
as.owinlist.SpatialPolygonsDataFrame
as.owinlist.SpatialPolygonsDataFrame function
GFupdate
GFupdate function
K.diff.single
K.diff.single function
K.u
K.u function
affine.fromSPDF
affine.fromSPDF function
grid2spoly
grid2spoly function
KinhomAverage
KinhomAverage function
exceedProbsAggregated
exceedProbsAggregated function
RandomFieldsCovFct
RandomFieldsCovFct function
GFreturnvalue
GFreturnvalue function
as.fromXYZ
as.fromXYZ function
aggCovInfo.ArealWeightedSum
aggCovInfo.ArealWeightedSum function
GFinitialise
GFinitialise function
getRotation
getRotation function
GAupdate
GAupdate function
as.im.fromXYZ
as.im.fromXYZ function
PriorSpec.list
PriorSpec.list function
eigenfrombase
eigenfrombase function
C.diff.single.im
C.diff.single.im function
LogGaussianPrior
LogGaussianPrior function
GPdrv2_Multitype
GPdrv2_Multitype function
cov.interp.fft
cov.interp.fft function
getCovParameters
getCovParameters function
addTemporalCovariates
addTemporalCovariates function
mcmcProgressTk
graphical progress monitor
BetaParameters
BetaParameters function
as.SpatialPixelsDataFrame
as.SpatialPixelsDataFrame function
GAupdate.MonteCarloAverage
GAupdate.MonteCarloAverage function
aggregateCovariateInfo
aggregateCovariateInfo function
chooseCellwidth
chooseCellwidth function
GPdrv2
GPdrv2 function
GFinitialise.nullFunction
GFinitialise.nullFunction function
GFfinalise.nullFunction
GFfinalise.nullFunction function
CovFunction
CovFunction function
as.owinlist
as.owinlist function
constanth
constanth function
GAreturnvalue.MonteCarloAverage
GAreturnvalue.MonteCarloAverage function
covEffects
covEffects function
discreteWindow
discreteWindow function
aggCovInfo
aggCovInfo function
affine.fromXYZ
affine.fromXYZ function
MonteCarloAverage
MonteCarloAverage function
as.ppp.mstppp
as.ppp.mstppp function
hvals.lgcpPredict
hvals.lgcpPredict function
GAinitialise.MonteCarloAverage
GAinitialise.MonteCarloAverage function
identify.lgcpPredict
identify.lgcpPredict function
expectation
expectation function
lgcpInits
lgcpInits function
mcmcProgressPrint
printing progress monitor
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function
gridav
gridav function
GAfinalise
GAfinalise function
GAinitialise.nullAverage
GAinitialise.nullAverage function
plot.lgcpAutocorr
plot.lgcpAutocorr function
extract
extract function
K.val
K.val function
initialiseAMCMC.andrieuthomsh
initaliseAMCMC.andrieuthomsh function
meanfield.lgcpPredict
meanfield.lgcpPredict function
etavals
etavals function
formulaList
formulaList function
lgcpbayes
lgcpbayes function
lambdaEst.stppp
lambdaEst.stppp function
getLHSformulaList
getLHSformulaList function
MALAlgcp
MALAlgcp function
mstppp.list
mstppp.list function
constantInTime
constantInTime function
print.lgcpgrid
print.lgcpgrid function
as.fromXYZ.fromFunction
as.fromXYZ.fromFunction function
GPdrv
GPdrv function
is.pow2
is.pow2 function
as.array.lgcpgrid
as.array.lgcpgrid function
guessinterp
guessinterp function
is.burnin
is this a burn-in iteration?
initialiseAMCMC
initialiseAMCMC function
as.stppp
as.stppp function
d.func
d.func function
priorpost
priorpost function
plot.temporalAtRisk
plot.temporalAtRisk function
grid2spts
grid2spts function
getRotation.stppp
getRotation.stppp function
hasNext.iter
hasNext.iter function
aggCovInfo.ArealWeightedMean
aggCovInfo.ArealWeightedMean function
aggCovInfo.Majority
aggCovInfo.Majority function
CovParameters
CovParameters function
meanfield.lgcpPredictINLA
meanfield.lgcpPredictINLA function
betavals
betavals function
GFinitialise.dump2dir
GFinitialise.dump2dir function
postcov
postcov function
GFfinalise
GFfinalise function
genFFTgrid
genFFTgrid function
mstppp.ppp
mstppp.ppp function
lgcpPredictSpatialPlusPars
lgcpPredictSpatialPlusPars function
print.fromSPDF
print.fromSPDF function
lgcpgrid.array
lgcpgrid.array function
assigninterp
assigninterp function
PriorSpec
PriorSpec function
grid2spdf
grid2spdf function
intens.lgcpSimMultitypeSpatialPlusParameters
intens.lgcpSimMultitypeSpatialPlusParameters function
loc2poly
loc2poly function
lgcpSimSpatialCovariates
lgcpSimSpatialCovariates function
affine.stppp
affine.stppp function
autocorr
autocorr function
as.ppp.stppp
as.ppp.stppp function
extendspatialAtRisk
extendspatialAtRisk function
lgcpSimMultitypeSpatialCovariates
lgcpSimMultitypeSpatialCovariates function
as.owin.stapp
as.owin.stapp function
initialiseAMCMC.constanth
initaliseAMCMC.constanth function
andrieuthomsh
andrieuthomsh function
roteffgain
roteffgain function
fftinterpolate.fromSPDF
fftinterpolate.fromSPDF function
Extract.mstppp
Extract.mstppp function
MALAlgcpAggregateSpatial.PlusPars
MALAlgcpAggregateSpatial.PlusPars function
as.im.fromSPDF
as.im.fromSPDF function
mcmctrace
mcmctrace function
circulant.matrix
circulant.matrix function
clearinterp
clearinterp function
add.list
add.list function
is.retain
do we retain this iteration?
lambdaEst.ppp
lambdaEst.ppp function
blockcircbase
blockcircbase function
extract.lgcpPredict
extract.lgcpPredict function
identifygrid
identifygrid function
as.stppp.stapp
as.stppp.stapp function
neattable
neattable function
print.mstppp
print.mstppp function
integerise.mstppp
integerise.mstppp function
GFreturnvalue.nullFunction
GFreturnvalue.nullFunction function
lgcpForecast
lgcpForecast function
g.diff.single
g.diff.single function
lgcpvignette
lgcpvignette function
print.temporalAtRisk
print.temporalAtRisk function
as.SpatialGridDataFrame.fromXYZ
as.SpatialGridDataFrame.fromXYZ function
computeGradtruncSpatial
computeGradtruncSpatial function
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function
loop.mcmc
loop over an iterator
fftmultiply
fftmultiply function
constantInTime.numeric
constantInTime.numeric function
minimum.contrast
minimum.contrast function
meanfield
meanfield function
rgauss
rgauss function
selectObsWindow.default
selectObsWindow.default function
print.stapp
print.stapp function
rotmat
rotmat function
minimum.contrast.spatiotemporal
minimum.contrast.spatiotemporal function
gridav.lgcpPredict
gridav.lgcpPredict function
mcmcProgressTextBar
text bar progress monitor
matchcovariance
matchcovariance function
GPlist2array
GPlist2array function
ginhomAverage
ginhomAverage function
plot.lgcpPredict
plot.lgcpPredict function
spatialAtRisk.function
spatialAtRisk.function function
plot.lgcpgrid
plot.lgcpgrid function
rr
rr function
plotExceed.lgcpPredict
plotExceed.lgcpPredict function
spatialAtRisk.default
spatialAtRisk.default function
expectation.lgcpPredict
expectation.lgcpPredict function
stppp.ppp
stppp.ppp function
ltar
ltar function
transgreen
transgreen function
resetLoop
reset iterator
thetaEst
thetaEst function
nullFunction
nullFunction function
my.ginhomAverage
my.ginhomAverage function
plot.stppp
plot.stppp function
lgcp-package
lgcp
setTxtProgressBar2
set the progress bar
getCounts
getCounts function
stppp.list
stppp.list function
varfield
varfield function
summary.mcmc
summary.mcmc function
getRotation.default
getRotation.default function
hvals
hvals function
as.im.fromFunction
as.im.fromFunction function
discreteWindow.lgcpPredict
discreteWindow.lgcpPredict function
plotExceed
plotExceed function
osppp2latlon
osppp2latlon function
showGrid
showGrid function
Cvb
Cvb function
print.gridaverage
print.gridaverage function
showGrid.stppp
showGrid.stppp function
getinterp
getinterp function
spatialparsEst
spatialparsEst function
autocorrMultitype
autocorrMultitype function
stapp.SpatialPolygonsDataFrame
stapp.SpatialPolygonsDataFrame function
mstppp
mstppp function
getpolyol
getpolyol function
print.lgcpPredict
print.lgcpPredict function
image.lgcpgrid
image.lgcpgrid function
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk.SpatialPolygonsDataFrame function
exceedProbs
exceedProbs function
xvals.fromXYZ
xvals.fromXYZ function
mcmcProgressNone
null progress monitor
plot.mstppp
plot.mstppp function
lgcpPrior
lgcpPrior function
parautocorr
parautocorr function
samplePosterior
samplePosterior function
MALAlgcpSpatial.PlusPars
MALAlgcpSpatial.PlusPars function
iteration
iteration number
lgcpPredictAggregated
lgcpPredictAggregated function
lgcpPredictMultitypeSpatialPlusPars
lgcpPredictMultitypeSpatialPlusPars function
lgcppars
lgcppars function
paramprecbase
paramprecbase function
checkObsWin
checkObsWin function
toral.cov.mat
toral.cov.mat function
mcmctrace.lgcpPredict
mcmctrace.lgcpPredict function
circulant
circulant function
plot.lgcpQuantiles
plot.lgcpQuantiles function
mstppp.stppp
mstppp.stppp function
as.SpatialPixelsDataFrame.lgcpgrid
as.SpatialPixelsDataFrame.lgcpgrid function
paramprec
paramprec function
parsummary
parsummary function
gridInWindow
gridInWindow function
stppp
stppp function
wtowns
Welsh town details: population
nullAverage
nullAverage function
plot.fromXYZ
plot.fromXYZ function
raster.lgcpgrid
raster.lgcpgrid function
postcov.lgcpPredictMultitypeSpatialPlusParameters
postcov.lgcpPredictMultitypeSpatialPlusParameters function
spatialIntensities.fromXYZ
spatialIntensities.fromXYZ function
tempRaster
tempRaster function
lgcpPredict
lgcpPredict function
varfield.lgcpPredictINLA
varfield.lgcpPredictINLA function
condProbs
condProbs function
stapp
stapp function
rescale.mstppp
rescale.mstppp function
as.owinlist.stapp
as.owinlist.stapp function
print.dump2dir
print.dump2dir function
target.and.grad.SpatioTemporalPlusPars
target.and.grad.SpatioTemporalPlusPars function
lgcpPredictAggregateSpatialPlusPars
lgcpPredictAggregateSpatialPlusPars function
neigh2D
neigh2D function
textsummary
textsummary function
xvals.lgcpPredict
xvals.lgcpPredict function
integerise
integerise function
interptypes
interptypes function
segProbs
segProbs function
lgcpgrid.matrix
lgcpgrid.matrix function
lgcpSimSpatial
lgcpSimSpatial function
my.KinhomAverage
my.KinhomAverage function
target.and.grad.spatial
target.and.grad.spatial function
quantile.lgcpPredict
quantile.lgcpPredict function
quantile.lgcpgrid
quantile.lgcpgrid function
seintens
seintens function
plot.mcmcdiag
plot.mcmcdiag function
temporalAtRisk.function
temporalAtRisk.function function
density.stppp
density.stppp function
serr
serr function
temporalAtRisk
temporalAtRisk function
rescale.stppp
rescale.stppp function
lgcpgrid.list
lgcpgrid.list function
showGrid.default
showGrid.default function
target.and.grad.spatialPlusPars
target.and.grad.spatialPlusPars function
fftinterpolate
fftinterpolate function
traceplots
traceplots function
spatialAtRisk.bivden
spatialAtRisk.bivden function
spatialAtRisk.lgcpgrid
spatialAtRisk.lgcpgrid function
intens.lgcpSimSpatialPlusParameters
intens.lgcpSimSpatialPlusParameters function
selectObsWindow.stppp
selectObsWindow.stppp function
muEst
muEst function
selectObsWindow
selectObsWindow function
touchingowin
touchingowin function
serr.lgcpPredict
serr.lgcpPredict function
smultiply.list
smultiply.list function
zvals.fromXYZ
zvals.fromXYZ function
expectation.lgcpPredictSpatialOnlyPlusParameters
expectation.lgcpPredictSpatialOnlyPlusParameters function
intens
intens function
postcov.lgcpPredictAggregateSpatialPlusParameters
postcov.lgcpPredictAggregateSpatialPlusParameters function
transblack
transblack function
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function
updateAMCMC
updateAMCMC function
plot.lgcpZmat
plot.lgcpZmat function
postcov.lgcpPredictSpatioTemporalPlusParameters
postcov.lgcpPredictSpatioTemporalPlusParameters function
as.SpatialGridDataFrame
as.SpatialGridDataFrame function
numCases
numCases function
showGrid.lgcpPredict
showGrid.lgcpPredict function
xvals.SpatialGridDataFrame
xvals.SpatialGridDataFrame function
varfield.lgcpPredict
varfield.lgcpPredict function
summary.lgcpgrid
summary.lgcpgrid function
zvals.default
zvals.default function
setoutput
setoutput function
stapp.list
stapp.list function
stGPrealisation
stGPrealisation function
target.and.grad.AggregateSpatialPlusPars
target.and.grad.AggregateSpatialPlusPars function
spatialIntensities
spatialIntensities function
temporalAtRisk.numeric
temporalAtRisk.numeric function
transblue
transblue function
target.and.grad.spatiotemporal
target.and.grad.spatiotemporal function
wpopdata
Population of Welsh counties
intens.lgcpPredict
intens.lgcpPredict function
sparsebase
sparsebase function
nextStep
next step of an MCMC chain
GAfinalise.MonteCarloAverage
GAfinalise.MonteCarloAverage function
xvals.default
xvals.default function
updateAMCMC.constanth
updateAMCMC.constanth function
zvals.SpatialGridDataFrame
zvals.SpatialGridDataFrame function
plotit
plotit function
GAreturnvalue
GAreturnvalue function
yvals.default
yvals.default function
GAfinalise.nullAverage
GAfinalise.nullAverage function
xvals
xvals function
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame.stapp function
GAinitialise
GAinitialise function
fftgrid
fftgrid function
gu
gu function
Extract.stppp
Extract.stppp function
is.SPD
is.SPD function
GammafromY
GammafromY function
constantInTime.stppp
constantInTime.stppp function
yvals.lgcpPredict
yvals.lgcpPredict function
exponentialCovFct
exponentialCovFct function
GPrealisation
GPrealisation function
mcmcpars
mcmcpars function
multiply.list
multiply.list function
GFreturnvalue.dump2dir
GFreturnvalue.dump2dir function
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk.SpatialGridDataFrame function
grid2spix
grid2spix function
getCellCounts
getCellCounts function
spatialAtRisk.im
spatialAtRisk.im function
fftinterpolate.fromXYZ
interpolate.fromXYZ function
hasNext
generic hasNext method
MALAlgcpSpatioTemporal.PlusPars
MALAlgcpSpatioTemporal.PlusPars function
zvals
zvals function
transred
transred function
getZmats
getZmats function
txtProgressBar2
A text progress bar with label
updateAMCMC.andrieuthomsh
updateAMCMC.andrieuthomsh function
lgcpgrid
lgcpgrid function
plot.fromSPDF
plot.fromSPDF function
integerise.stppp
integerise.stppp function
postcov.lgcpPredictSpatialOnlyPlusParameters
postcov.lgcpPredictSpatialOnlyPlusParameters function
print.fromFunction
print.fromFunction function
seintens.lgcpPredict
seintens.lgcpPredict function
spatialAtRisk
spatialAtRisk function
rr.lgcpPredict
rr.lgcpPredict function
spatialIntensities.fromSPDF
spatialIntensities.fromSPDF function
spatialAtRisk.fromXYZ
spatialAtRisk.fromXYZ function
target.and.grad.MultitypespatialPlusPars
target.and.grad.MultitypespatialPlusPars function
wtowncoords
Welsh town details: location
window.lgcpPredict
window.lgcpPredict function
yvals.SpatialGridDataFrame
yvals.SpatialGridDataFrame function
blockcircbaseFunction
blockcircbaseFunction function
print.mcmc
print.mcmc function
yvals.fromXYZ
yvals.fromXYZ function
yvals
yvals function
GAreturnvalue.nullAverage
GAreturnvalue.nullAverage function##'
GaussianPrior
GaussianPrior function
YfromGamma
YfromGamma function
SpikedExponentialCovFct
SpikedExponentialCovFct function
as.list.lgcpgrid
as.list.lgcpgrid function
circulant.numeric
circulant.numeric function
gOverlay
gOverlay function
lambdaEst
lambdaEst function
gridfun
gridfun function
lgcpPredictSpatioTemporalPlusPars
lgcpPredictSpatioTemporalPlusPars function
lgcpSim
lgcpSim function
mcmcLoop
iterator for MCMC loops
osppp2merc
osppp2merc function
plotExceed.array
plotExceed.array function
print.stppp
print.stppp function