topGO(results, ontology = c("BP", "CC", "MF"), sort = NULL, number = 20L, truncate.term = NULL) topKEGG(results, sort = NULL, number = 20L, truncate.path = NULL)
results. Defaults to all gene lists.
resultsbut with rows subsetted by Ontology and sorted by p-value.
topGOorganizes the output from
goanainto top-tables of the most significant GO terms.
topKEGGsimilarly extracts the most significant KEGG pathways from
keggaoutput. In either case, rows are sorted by the minimum p-value of any of the result columns specified by
See 10.GeneSetTests for a description of other functions used for gene set testing.
# See goana examples