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limorhyde2 (version 0.1.1)

Quantify Rhythmicity and Differential Rhythmicity in Genomic Data

Description

Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.

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install.packages('limorhyde2')

Monthly Downloads

346

Version

0.1.1

License

GPL-2

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Maintainer

Jake Hughey

Last Published

January 20th, 2026

Functions in limorhyde2 (0.1.1)

getStatsIntervals

Compute credible intervals for rhythm or differential rhythm statistics
getPosteriorSamples

Draw samples from posterior distributions of fitted models
getExpectedMeasIntervals

Compute credible intervals for expected measurements
getPosteriorFit

Compute posterior fit for linear models for rhythmicity
getExpectedMeas

Compute expected measurements from fitted models
getModelFit

Fit linear models for rhythmicity in one or more conditions
GSE54650

Gene expression data for GSE54650
getDiffRhythmStats

Compute differential rhythm statistics from fitted models
GSE34018

Gene expression data for GSE34018
getRhythmStats

Compute rhythm statistics from fitted models
mergeMeasMeta

Merge measurements and metadata