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logicFS (version 1.42.0)

Identification of SNP Interactions

Description

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

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Version

Version

1.42.0

License

LGPL (>= 2)

Maintainer

Holger Schwender

Last Published

February 15th, 2017

Functions in logicFS (1.42.0)

predict.logicBagg

Predict Method for logicBagg objects
vim.chisq

ChiSquare Based Importance
logicFS

Feature Selection with Logic Regression
data.logicfs

Example Data of logicFS
vim.norm

Standardized and Sign-Permutation Based Importance Measure
predict.mlogreg

Predict Method for mlogreg Objects
make.snp.dummy

SNPs to Dummy Variables
logic.oob

Prime Implicants
getMatEval

Evaluate Prime Implicants
logic.bagging

Bagged Logic Regression
print.logicFS

Print a logicFS object
vim.permSNP

Permutation Based Importance Measures
vim.approxPval

Approximate P-Value Based Importance Measure
vim.set

VIM for SNPs and Sets of Variables
vim.input

VIM for Inputs
logic.pimp

Prime Implicants
plot.logicFS

Variable Importance Plot
mlogreg

Multinomial Logic Regression
vim.logicFS

Importance Measures
logicFS-internal

Internal logicFS functions
vim.ebam

EBAM Based Importance