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logicFS (version 1.42.0)
Identification of SNP Interactions
Description
Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.
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Version
1.42.0
1.40.0
1.38.0
1.36.0
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Version
1.42.0
License
LGPL (>= 2)
Maintainer
Holger Schwender
Last Published
September 12th, 2013
Functions in logicFS (1.42.0)
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predict.logicBagg
Predict Method for logicBagg objects
vim.chisq
ChiSquare Based Importance
logicFS
Feature Selection with Logic Regression
data.logicfs
Example Data of logicFS
vim.norm
Standardized and Sign-Permutation Based Importance Measure
predict.mlogreg
Predict Method for mlogreg Objects
make.snp.dummy
SNPs to Dummy Variables
logic.oob
Prime Implicants
getMatEval
Evaluate Prime Implicants
logic.bagging
Bagged Logic Regression
print.logicFS
Print a logicFS object
vim.permSNP
Permutation Based Importance Measures
vim.approxPval
Approximate P-Value Based Importance Measure
vim.set
VIM for SNPs and Sets of Variables
vim.input
VIM for Inputs
logic.pimp
Prime Implicants
plot.logicFS
Variable Importance Plot
mlogreg
Multinomial Logic Regression
vim.logicFS
Importance Measures
logicFS-internal
Internal logicFS functions
vim.ebam
EBAM Based Importance