Performs differential gene expression of filtered microarray data. Parameters such as top differentially expressed genes or a set of genes of interest, number of genes to list, the amount of log fold change, p-value cut off, adjustment method and sort order can be set from the dialog box.
Function can perform differential gene expression on filtered microarray data if exists object of Affymetrix data as dat2Affy.f, Agilent_OneColor as datAgOne2.f, Agilent_TwoColor as datAgTwo2.f, Illumina_Beadarray as datIllBA2.f, Illumina_Lumi as lumi_NQ.f, Nimblegen as data.matrix_Nimblegen2.f, Series_Matrix as data.matrixNorm.f and Online_Data as data.matrix_onlineNorm.f. The outputs are DE_Affy for Affymetrix, DE_Ag1 for Agilent_OneColor, DE_Ag2 for Agilent_TwoColor, DE_Il_B for Illumina_Beadarray, DE_Il_L for Illumina_Lumi, DE_N for Nimblegen, DE_S for Series_Matrix and DE_O for Online procedures.