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maGUI (version 2.4)

A Graphical User Interface for Microarray Data Analysis and Annotation

Description

Provides a Graphical User Interface for Analysing DNA Microarray Data. It performs functional enrichment on genes of interest, identifies gene symbols and also builds co-expression network.

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Version

Install

install.packages('maGUI')

Monthly Downloads

226

Version

2.4

License

GPL-2

Maintainer

Dhammapal Bharne

Last Published

May 18th, 2020

Functions in maGUI (2.4)

Specific Filtering on Normalized Microarray Data

Preprocessing and Analysis of Loaded Series_Matrix Data

graph_gsta_goMF

Plots Graph of GO Terms for Molecular Function of GSTA

Preprocessing and Analysis of Loaded Online Data

Gene Set Enrichment Analysis for KEGG Pathways

Gene Set Enrichment Analysis for Cellular Component

Gene Set Enrichment Analysis for Biological Process

Mapping of Identifiers of Microarray Data to Genes

Gene Set Enrichment Analysis for Molecular Function

Preprocessing and Analysis of Loaded Affymetrix Data

Preprocessing and Analysis of Loaded Agilent_TwoColor Data

graph_gsta_kegg

Plots Graph of Pathways for a KEGG ID from GSTA

Gene Set Test Analysis for Biological Process

Classification of Differentially Expression Genes

Gene Set Test Analysis for KEGG Pathways

graph_gsea_goMF

Plots Graph of GO Terms for Molecular Function of GSEA

graph_gsea_kegg

Plots Graph of Pathways for a KEGG ID from GSEA

Gene Set Test Analysis for Molecular Function

Preprocessing and Analysis of Loaded Agilent_OneColor Data

graph_gsea_goBP

Plots Graph of GO Terms for Biological Process of GSEA

graph_gsea_goCC

Plots Graph of GO Terms for Cellular Component of GSEA

Preprocessing and Analysis of Loaded Illumina_Beadarray Data

Preprocessing and Analysis of Loaded Illumina_Lumi Data

Statisitical Significance of Filtering Data

Sample Size Estimation on Normalized Microarray Data

Gene Set Test Analysis for Cellular Component

Pricipal Component Analysis on Normalized Microarray Data

Differntial Gene Expression of Filtered Data

Clustering of Normalized Microarray Data

Protein-Protein Interactions Prediction from Microarray Data

graph_gsta_goBP

Plots Graph of GO Terms for Biological Process of GSTA

graph_gsta_goCC

Plots Graph of GO Terms for Cellular Component of GSTA

Preprocessing and Analysis of Loaded Nimblegen Data

Co-regulated Network for Differentially Expressed Genes

UnSpecific Filtering on Normalized Microarray Data

A Graphical User Interface for Microarray Data Analysis and Annotation

A Graphical User Interface for Microarray Data Analysis and Annotation