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maGUI (version 2.4)

filter_sp2: Specific Filtering on Normalized Microarray Data

Description

Performs specific filtering on normalized microarray data. It takes control and test sample names of one or mulitple groups as input.

Arguments

Details

Function can perform specific filtering on normalized microarray data if exists object new of Affymetrix data as use.dat2Affy.m, Agilent_OneColor as use.datAgOne2.m, Agilent_TwoColor as use.datAgTwo2.m, Illumina_Beadarray as use.datIllBA2.m2, Illumina_Lumi as use.lumi_NQ.m, Nimblegen as use.data.matrix_Nimblegen2.m, Series_Matrix as use.data.matrixNorm.m and Online_Data as use.data.matrix_onlineNorm.m. The outputs are as .f object to the normalized data. It also generates data with p-value less than 0.01 as statistically significant genes.