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maGUI (version 2.4)

graph_gsta_kegg: Plots Graph of Pathways for a KEGG ID from GSTA

Description

Plots a network graph of KEGG pathways for a KEGG ID obtained from gene set test analysis.

Arguments

Details

Function can plot a graph of KEGG Pathways for KEGG ID obtained from gene set test analysis. It is a network of genes as nodes and links as directed lines. It is performed if exists object KEGGtable.out_Affy for Affymetrix, KEGGtable.out_Ag1 for Agilent_OneColor, KEGGtable.out_Ag2 for Agilent_TwoColor, KEGGtable.out_Il_B for Illumina_Beadarray, KEGGtable.out_Il_L for Illumina_Lumi, KEGGtable.out_N for Nimblegen, KEGGtable.out_S for Series_Matrix and KEGGtable.out_O for Online procedures.