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gsea_goBP: Gene Set Enrichment Analysis for Biological Process

Description

Performs Gene Set Enrichment Analysis on statistically significant microarray data to obtain GO terms of Biological Process.

Arguments

Details

Function can perform gene set enrichment analysis of statistical significant microarray data if exists object of Affymetrix, Agilent_OneColor, Agilent_TwoColor, Illumina_Beadarray, Illumina_Lumi, Nimblegen, Series_Matrix and Online as .s data. It needs GEOmetadb.sqlite database file or internet connection. The outputs are GOresultBP_Affy for Affymetrix, GOresultBP_Ag1 for Agilent_OneColor, GOresultBP_Ag2 for Agilent_TwoColor, GOresultBP_Il_B for Illumina_Beadarray, GOresultBP_Il_L for Illumina_Lumi, GOresultBP_N for Nimblegen, GOresultBP_S for Series_Matrix and GOresultBP_O for Online procedures.