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gsea_goCC: Gene Set Enrichment Analysis for Cellular Component

Description

Performs Gene Set Enrichment Analysis on statistically significant microarray data to obtain GO terms of Cellular Component.

Arguments

Details

Function can perform gene set enrichment analysis of statistical significant microarray data if exists object of Affymetrix, Agilent_OneColor, Agilent_TwoColor, Illumina_Beadarray, Illumina_Lumi, Nimblegen, Series_Matrix and Online as .s data. It needs GEOmetadb.sqlite database file or internet connection. The outputs are GOresultCC_Affy for Affymetrix, GOresultCC_Ag1 for Agilent_OneColor, GOresultCC_Ag2 for Agilent_TwoColor, GOresultCC_Il_B for Illumina_Beadarray, GOresultCC_Il_L for Illumina_Lumi, GOresultCC_N for Nimblegen, GOresultCC_S for Series_Matrix and GOresultCC_O for Online procedures.