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maGUI (version 2.4)

gsta_goCC: Gene Set Test Analysis for Cellular Component

Description

Performs Gene Set Test Analysis on normalized microarray data to obtain GO terms of Cellular Component.

Arguments

Details

Function can perform gene set test analysis of normalized microarray data if exists object of Affymetrix, Agilent_OneColor, Agilent_TwoColor, Illumina_Beadarray, Illumina_Lumi, Nimblegen, Series_Matrix and Online as .m or m2 data. It needs GEOmetadb.sqlite database file or internet connection. The outputs are GOtable.outCC_Affy for Affymetrix, GOtable.outCC_Ag1 for Agilent_OneColor, GOtable.outCC_Ag2 for Agilent_TwoColor, GOtable.outCC_Il_B for Illumina_Beadarray, GOtable.outCC_Il_L for Illumina_Lumi, GOtable.outCC_N for Nimblegen, GOtable.outCC_S for Series_Matrix and GOtable.outCC_O for Online procedures.