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maGUI (version 2.4)

pca: Pricipal Component Analysis on Normalized Microarray Data

Description

Performs Principal Component Analysis on normalized microarray data

Arguments

Details

Function can perform pricipal component analysis on normalized microarray data if exists object of Affymetrix data as dat2Affy.m, Agilent_OneColor as datAgOne2.m, Agilent_TwoColor as datAgTwo2.m, Illumina_Beadarray as datIllBA2.m2, Illumina_Lumi as lumi_NQ.m, Nimblegen as data.matrix_Nimblegen2.m, Series_Matrix as data.matrixNorm.m and Online_Data as data.matrix_onlineNorm.m. The outputs are pca_Affy for Affymetrix, pca_Ag1 for Agilent_OneColor, pca_Ag2 for Agilent_TwoColor, pca_Il_B for Illumina_Beadarray, pca_Il_L for Illumina_Lumi, pca_N for Nimblegen, pca_S for Series_Matrix and pca_O for Online procedures.