Learn R Programming

The current R version of MAGI is now available as a package on CRAN, and may be installed via

install.packages("magi")

Please see https://cran.r-project.org/package=magi for the full documentation and vignette.

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Version

Install

install.packages('magi')

Monthly Downloads

218

Version

1.2.5

License

MIT + file LICENSE

Maintainer

Shihao Yang

Last Published

October 22nd, 2025

Functions in magi (1.2.5)

summary.magioutput

Summary of parameter estimates from magioutput object
ptransmodelODE

Protein transduction model
magi

magi: MAnifold-Constrained Gaussian Process Inference
fnmodelODE

The FitzHugh-Nagumo (FN) equations
is.magioutput

MagiSolver output (magioutput) object
gpcov

Conditional covariance of Gaussian process given observations
setDiscretization

Set discretization level
plot.magioutput

Generate plots from magioutput object
testDynamicalModel

Test dynamic system model specification
MagiPosterior

MAGI posterior density
gpsmoothing

Gaussian process smoothing
hes1modelODE

Hes1 equations: oscillation of mRNA and protein levels
gpsmoothllik

Marginal log-likelihood for Gaussian process smoothing
FNdat

Dataset of noisy observations from the FitzHugh-Nagumo (FN) equations
MagiSolver

MAnifold-constrained Gaussian process Inference (MAGI)
gpmean

Conditional mean of Gaussian process given observations
calCov

Calculate stationary Gaussian process kernel