pairmod

Original gene expression data matrix. With G rows (number of genes) and S column (number of samples).

theta

Given a gene in initial set, top <code>npair</code> best performing pairs correspond to that gene are selected (Default is 10).

npair


Combine each gene in initial set with all genes in the original set. Top <code>npair</code>  pairs are selected to construct the <code>Q</code> matrix.


Find dark genes. These genes are often disregarded due to no detected mutation or differential expression, but are important in coordinating the functionality in cancer networks.

pairmod: Find best performing pairs

Description

Usage

Arguments

Value