can_run_mcbette

Can 'mcbette' run?
Will return <a href="/link/TRUE?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::TRUE">TRUE</a> if:<ul>
<li>(1) Running on Linux or MacOS</li>
<li>(2) BEAST2 is installed</li>
<li>(3) The BEAST2 NS package is installed</li>
</ul>

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'mcbette' allows to do a Bayesian model comparison over some
site and clock models,
using 'babette' (<https://github.com/ropensci/babette/>).

Richèl J.C. Bilderbeek

mcbette

Model Comparison Using 'babette'

Joëlle Barido-Sottani

Vikram Baliga

can_run_mcbette function

<dl><dt>beast2_folder</dt>
<dd>the folder where the BEAST2 is installed.
Note that this is not the folder where the BEAST2 executable is installed:
the BEAST2 executable is in a subfolder.
Use get_default_beast2_folder
 to get the default BEAST2 folder.
Use get_default_beast2_bin_path
 to get the full path to the default BEAST2 executable.
Use get_default_beast2_jar_path
 to get the full path to the default BEAST2 jar file.</dd></dl>

Arguments

Author

Can 'mcbette' run?
Will return <a href='https://rdrr.io/r/base/logical.html'>TRUE</a> if:<ul>
<li>(1) Running on Linux or MacOS</li>
<li>(2) BEAST2 is installed</li>
<li>(3) The BEAST2 NS package is installed</li>
</ul>

Can 'mcbette' run? — can_run_mcbette

<dl>

<dt>beast2_folder</dt>
<dd>the folder where the BEAST2 is installed.
Note that this is not the folder where the BEAST2 executable is installed:
the BEAST2 executable is in a subfolder.
Use get_default_beast2_folder
 to get the default BEAST2 folder.
Use get_default_beast2_bin_path
 to get the full path to the default BEAST2 executable.
Use get_default_beast2_jar_path
 to get the full path to the default BEAST2 jar file.</dd>

</dl>

can_run_mcbette: Can 'mcbette' run?

Description

Usage

Value

Arguments

Author

Examples