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mcbette (version 1.15.3)

Model Comparison Using 'babette'

Description

'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'mcbette' allows to do a Bayesian model comparison over some site and clock models, using 'babette' ().

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Version

Install

install.packages('mcbette')

Monthly Downloads

247

Version

1.15.3

License

GPL-3

Issues

3

Pull Requests

0

Stars

7

Forks

3

Maintainer

Richèl J.C. Bilderbeek

Last Published

August 19th, 2024

Functions in mcbette (1.15.3)

est_marg_lik

Estimate the marginal likelihood for an inference model.
can_run_mcbette

Can 'mcbette' run?
get_mcbette_state

Get the current state of mcbette
default_params_doc

Documentation of general function arguments. This function does nothing. It is intended to inherit function argument documentation.
check_beast2_ns_pkg

Checks if the BEAST2 'NS' package is installed.
check_mcbette_state

Check if the mcbette_state is valid.
calc_weights

Calculate the weights for each marginal likelihood
get_test_marg_liks

Get testing marg_liks
est_marg_liks

Estimate the marginal likelihoods for one or more inference models
check_marg_liks

Check if the marg_liks are of the same type as returned by est_marg_liks.
interpret_bayes_factor

Interpret a Bayes factor
interpret_marg_lik_estimates

Interpret the marginal likelihood estimates
mcbette_report

Create a mcbette report, to be used when reporting bugs
plot_marg_liks

Plot the marg_liks
is_marg_liks

Determine if the marg_liks is valid
mcbette_self_test

Performs a minimal mcbette run
set_mcbette_state

Set the mcbette state.
mcbette-package

mcbette: Model Comparison Using Babette