check_mcbette_state

Check if the <code>mcbette_state</code> is valid.
Will <a href="/link/stop?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::stop">stop</a> otherwise.

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'mcbette' allows to do a Bayesian model comparison over some
site and clock models,
using 'babette' (<https://github.com/ropensci/babette/>).

Richèl J.C. Bilderbeek

mcbette

Model Comparison Using 'babette'

Joëlle Barido-Sottani

Vikram Baliga

check_mcbette_state function

<dl><dt>mcbette_state</dt>
<dd>the mcbette state,
which is a <a href="/link/list?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::list">list</a> with the following elements:<ul>
<li>beast2_installed
 <a href="/link/TRUE?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::TRUE">TRUE</a> if BEAST2 is installed,
 <a href="/link/FALSE?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::FALSE">FALSE</a> otherwise</li>
<li>ns_installed
 <a href="/link/NA?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::NA">NA</a> if BEAST2 is not installed.
 <a href="/link/TRUE?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::TRUE">TRUE</a> if the BEAST2 NS package is installed
 <a href="/link/FALSE?package=mcbette&version=1.15.3" data-mini-rdoc="mcbette::FALSE">FALSE</a> if the BEAST2 NS package is not installed</li>
</ul></dd></dl>

Arguments

Author

Check if the <code>mcbette_state</code> is valid.
Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> otherwise.

Check if the mcbette_state is valid. — check_mcbette_state

<dl>

<dt>mcbette_state</dt>
<dd>the mcbette state,
which is a <a href='https://rdrr.io/r/base/list.html'>list</a> with the following elements:<ul>
<li>beast2_installed
 <a href='https://rdrr.io/r/base/logical.html'>TRUE</a> if BEAST2 is installed,
 <a href='https://rdrr.io/r/base/logical.html'>FALSE</a> otherwise</li>
<li>ns_installed
 <a href='https://rdrr.io/r/base/NA.html'>NA</a> if BEAST2 is not installed.
 <a href='https://rdrr.io/r/base/logical.html'>TRUE</a> if the BEAST2 NS package is installed
 <a href='https://rdrr.io/r/base/logical.html'>FALSE</a> if the BEAST2 NS package is not installed</li>
</ul></dd>

</dl>

check_mcbette_state: Check if the `mcbette_state` is valid.

Description

Usage

Value

Arguments

Author