mcbette_report

Create a mcbette report,
to be used when reporting bugs

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'mcbette' allows to do a Bayesian model comparison over some
site and clock models,
using 'babette' (<https://github.com/ropensci/babette/>).

Richèl J.C. Bilderbeek

mcbette

Model Comparison Using 'babette'

Joëlle Barido-Sottani

Vikram Baliga

mcbette_report function

<dl><dt>beast2_folder</dt>
<dd>the folder where the BEAST2 is installed.
Note that this is not the folder where the BEAST2 executable is installed:
the BEAST2 executable is in a subfolder.
Use get_default_beast2_folder
 to get the default BEAST2 folder.
Use get_default_beast2_bin_path
 to get the full path to the default BEAST2 executable.
Use get_default_beast2_jar_path
 to get the full path to the default BEAST2 jar file.</dd></dl>

Arguments

Author

Create a mcbette report,
to be used when reporting bugs — mcbette_report

<dl>

<dt>beast2_folder</dt>
<dd>the folder where the BEAST2 is installed.
Note that this is not the folder where the BEAST2 executable is installed:
the BEAST2 executable is in a subfolder.
Use get_default_beast2_folder
 to get the default BEAST2 folder.
Use get_default_beast2_bin_path
 to get the full path to the default BEAST2 executable.
Use get_default_beast2_jar_path
 to get the full path to the default BEAST2 jar file.</dd>

</dl>

mcbette_report: Create a mcbette report, to be used when reporting bugs

Description

Usage

Value

Arguments

Author

Examples