MultiDimensional Gene Set Analysis
About
The mdgsa library implements the gene set analysis methodology developed in
Montaner and Dopazo 2010.
It presents a flexible framework for analyzing the enrichment
of gene sets along a given ranking of genes.
The novelty is that,
not just one ranking index but two,
may be analyzed and jointly explored
in a multidimensional gene set analysis.
Install
Development version is available in GitHub:
https://github.com/dmontaner/mdgsa
You can install the development version form your R session doing:
library (devtools)
install_github ("dmontaner/mdgsa")Documentation
Vignette
- PDF format
- MD format (readable in GitHub)