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medfate (version 0.8.2)

Mediterranean Forest Simulation

Description

Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

0.8.2

License

GPL (>= 2)

Maintainer

Miquel Caceres

Last Published

May 29th, 2019

Functions in medfate (0.8.2)

hydrology_rainInterception

Rainfall interception

scalingconductance

Scaling from conductivity to conductance

soil hydrology

Soil infiltration and bare soil evaporation

Plant values

Plant description functions

spwb_maximumTranspirationRatioPlot

Maximum transpiration vs. LAI

plot.spwb

Displays simulation results

spwb_ldrOptimization

Optimization of root distribution

photo

Photosynthesis submodel functions

pheno_updateLeaves

Leaf phenology

supplyfunctions

Hydraulic supply functions

Forest values

Forest utility functions

fuel_properties

Fuel stratification and fuel characteristics

spwb_day

Soil-plant water balance for a single day

growth

Forest growth

spwb_ldrCalibration

Calibration of root distribution

SpParamsMED

Parameter values for Mediterranean species

forest

Forest description

spwbInput

Input for simulation models

modifySpParams

Modify species/cohort parameters

conductancefunctions

Hydraulic confuctance functions

hydrology_verticalInputs

Soil water input processes

light

Light extinction and absortion functions

root

Distribution of fine roots

Species values

Species description functions

plot.spwb_day

Displays simulation results for one day

tissuemoisture

Tissue moisture functions

soil thermodynamics

Soil thermodynamic functions

soil

Soil initialization

soil texture and hydraulics

Soil texture and hydraulics

spwb_validation

Validation of soil-plant water balance simulations

spwb_waterUseEfficiency

Water use efficiency

spwb

Soil-plant water balance

transpiration

Transpiration submodel functions

soilgridsParams

SoilGrids soil description fetcher

spwb_resistances

Soil-plant resistances

spwb_stress

Drought stress indices

extractSFIforest

Extract forest from SFI data

fire_behaviour

Fire behaviour functions

SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)

Vertical profiles

biophysics

Physical and biophysical utility functions

defaultControl

Default control parameters for models

defaultSoilParams

Default soil parameters

exampleforest

Example forest stand

examplemeteo

Example daily meteorology data