metaCluster (version 0.1.1)

GC.content: Calculation of GC content

Description

This function will calculate GC content from each sequence or contigs of a FASTA file.

Usage

GC.content(fasta_file)

Value

Value of the GC content of each sequence or contig.

Arguments

fasta_file

Name of the fasta or multifasta file

Author

Dipro Sinha <>,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra

Examples

library(metaCluster)
library(seqinr)
sample_data <- read.fasta(file = system.file("extdata/sample1.fasta", package = "metaCluster"),
seqtype = "DNA")
gc <- GC.content(sample_data)