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metaCluster (version 0.1.1)

Metagenomic Clustering

Description

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

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Version

Install

install.packages('metaCluster')

Monthly Downloads

203

Version

0.1.1

License

GPL-3

Maintainer

Dipro Sinha

Last Published

June 20th, 2024

Functions in metaCluster (0.1.1)

clust.suite

Determination of Suitable Clustering Algorithm for Metagenomics Data
GC.content

Calculation of GC content
oligo.freq

Oligonucleotide Frequency
opt.clust.num

Finding Optimum Number of Cluster for Metagenomics Data
metafeatures

Metagenomic data