oligo.freq

This function will calculate oligonucleotide frequency of each sequence or contig from a FASTA file.

 oligonucleotide frequency 

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Dipro Sinha

metaCluster

Metagenomic Clustering

Sayanti Guha Majumdar

Anu Sharma

Dwijesh Chandra Mishra

Md Yeasin

oligo.freq function

<dl> <dt>fasta_file</dt>
<dd>Name of the fasta or multifasta file</dd> <dt>f</dt>
<dd>Length of the oligonucleotide</dd></dl>

Arguments

Dipro Sinha &lt;<a href="/link/diprosinha%40gmail.com?package=metaCluster&version=0.1.1" data-mini-rdoc="metaCluster::diprosinha@gmail.com">diprosinha@gmail.com</a>&gt;,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra

Author

Oligonucleotide Frequency — oligo.freq

<dl>

 <dt>fasta_file</dt>
<dd>Name of the fasta or multifasta file</dd>

 <dt>f</dt>
<dd>Length of the oligonucleotide</dd>

</dl>

Dipro Sinha &lt;<a href='mailto:diprosinha@gmail.com'>diprosinha@gmail.com</a>&gt;,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra

oligo.freq: Oligonucleotide Frequency

Description

Usage

Value

Arguments

Author

Examples