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metaMA (version 2.1)

Meta-analysis for MicroArrays

Description

Combines either p-values or modified effect sizes from different studies to find differentially expressed genes

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Version

Install

install.packages('metaMA')

Monthly Downloads

252

Version

2.1

License

GPL

Maintainer

Guillemette Marot

Last Published

October 29th, 2012

Functions in metaMA (2.1)

pvalcombination.paired

P-value combination for paired data
EScombination

Effect size combination for unpaired data
rowVars

Row variance of an array
row.ttest.statp

Row paired t-tests
directEScombi

Direct effect size combination
Singhdata

Singh dataset
directpvalcombi

Direct p-value combination
metaMA-package

Meta-analysis for MicroArrays
effectsize

Calculates effect sizes from given t or moderated t statistics
row.ttest.stat

Row t-tests
pvalcombination

P-value combination for unpaired data
EScombination.paired

Effect size combination for paired data
IDDIRR

Integration-driven Discovery and Integration-driven Revision Rates
calcfit2Diffrep

Empirical Bayes statistics from limma analysis with unpaired data