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metaSeq (version 1.12.0)
Meta-analysis of RNA-Seq count data in multiple studies
Description
The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method
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Version
1.12.0
1.10.0
1.8.0
1.6.0
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Version
1.12.0
License
Artistic-2.0
Maintainer
Koki Tsuyuzaki
Last Published
December 1st, 2013
Functions in metaSeq (1.12.0)
Search functions
Accelerate.NOISeq
Accelerating NOISeq
Stouffer.test
Stouffer's weighted Z-score method (Inverse normal method)
meta.oneside.noiseq
One-sided NOISeq for meta-analysis
text.busca_win
One of C++ re-implimated components in NOISeq
metaSeq-package
Meta-analysis of RNA-Seq count data in multiple studies
Result.Meta
Result of meta.oneside.noiseq against Brast Cancer data
Reset.Accelerate.NOISeq
Reset Accelerate.NOISeq function
Fisher.test
Fisher's combined probability method
pvals
P-values or probability calculated by DESeq, edgeR, baySeq, NOISeq, and DEGseq against StudyA
BreastCancer
Multiple RNA-Seq count data designed as Breast Cancer cell lines vs Normal cells
text.n.menor_win
One of C++ re-implimated components in NOISeq
meta.readData
readData function for meta-analysis
other.oneside.pvalues
Optional function for non-NOISeq method
text.busca_unix
One of C++ re-implimated components in NOISeq
StudyA
Count data of SRP008746
text.n.menor_unix
One of C++ re-implimated components in NOISeq