metaSeq-package:
Meta-analysis of RNA-Seq count data in multiple studies
Description
Meta-analysis for multiple studies's RNA-Seq count data. In this package, probability of gene differential is calculated by NOISeq, which is customized for one-sided test. One-sided probabilities are integrated by Fisher's method (without weighting) or Stouffer's method (with weighting by sample-size). P-values or probabilities calculated by non-NOISeq methods are also applicable by other.oneside.pvalues.
Details
|
Package: |
| metaSeq |
|
Type: |
| Package |
|
Version: |
| 1.3.2 |
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Date: |
| 2013-12-2 |
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License: |
| Artistic-2.0 |
References
Tarazona, S. and Garcia-Alcalde, F. and Dopazo, J. and Ferrer, A. and Conesa, A. (2011) Differential expression in RNA-seq: A matter of depth. Genome Research,
21(12): 2213-2223