Parse the UNITE general release FASTA file
parse_unite_general(input = NULL, file = NULL, include_seqs = TRUE)
(character
) One of the following:
See the example below for what this
looks like. The parser read_fasta
produces output like this.
Each vector should have one base per element.
This is the result of parsers like
read.FASTA
.
This is the result of parsers like
read.fasta
.
The path to a FASTA file containing sequences to use. Either "input" or "file" must be supplied but not both.
(logical
of length 1) If TRUE
, include
sequences in the output object.
The input file has a format like:
>Glomeromycota_sp|KJ484724|SH523877.07FU|reps|k__Fungi;p__Glomeromycota;c__unid... ATAATTTGCCGAACCTAGCGTTAGCGCGAGGTTCTGCGATCAACACTTATATTTAAAACCCAACTCTTAAATTTTGTAT...
Other parsers: parse_greengenes
,
parse_mothur_tax_summary
,
parse_mothur_taxonomy
,
parse_newick
, parse_phyloseq
,
parse_phylo
,
parse_qiime_biom
, parse_rdp
,
parse_silva_fasta