metacoder

0th

Percentile

Metacoder

A package for planning and analysis of amplicon metagenomics research projects.

Details

The goal of the metacoder package is to provide a set of tools for:

  • Standardized parsing of taxonomic information from diverse resources.

  • Visualization of statistics distributed over taxonomic classifications.

  • Evaluating potential metabarcoding primers for taxonomic specificity.

  • Providing flexible functions for analyzing taxonomic and abundance data.

To accomplish these goals, metacoder leverages resources from other R packages, interfaces with external programs, and provides novel functions where needed to allow for entire analyses within R.

Documentation

The full documentation can be found online at http://grunwaldlab.github.io/metacoder_documentation.

There is also a short vignette included for offline use that can be accessed by the following code:

browseVignettes(package = "metacoder")

Plotting:

In silico PCR:

Analysis:

Parsers:

Writers:

Database querying:

Aliases
  • metacoder
  • metacoder-package
Documentation reproduced from package metacoder, version 0.3.3, License: GPL-2 | GPL-3

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