parse_newick

0th

Percentile

Parse a Newick file

Parse a Newick file into a taxmap object.

Usage
parse_newick(file = NULL, text = NULL)
Arguments
file

(character of length 1) The file path to the input file. Either file or text must be supplied but not both.

text

(character of length 1) The raw text to parse. Either file or text must be supplied but not both.

Details

The input file has a format like:

(ant:17, (bat:31, cow:22):7, dog:22, (elk:33, fox:12):40);
(dog:20, (elephant:30, horse:60):20):50;

Value

taxmap

See Also

Other parsers: parse_dada2, parse_edge_list, parse_greengenes, parse_mothur_tax_summary, parse_mothur_taxonomy, parse_phyloseq, parse_phylo, parse_qiime_biom, parse_rdp, parse_silva_fasta, parse_ubiome, parse_unite_general

Aliases
  • parse_newick
Documentation reproduced from package metacoder, version 0.3.3, License: GPL-2 | GPL-3

Community examples

Looks like there are no examples yet.